miRNA display CGI


Results 1 - 20 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9137 5' -57.3 NC_002512.2 + 103331 0.65 0.931282
Target:  5'- gGCC-CGGGCggcguagcccgggGCGGACGgCACGGucGAGGu -3'
miRNA:   3'- -UGGuGCUCGa------------CGCCUGC-GUGUC--CUUC- -5'
9137 5' -57.3 NC_002512.2 + 221734 0.66 0.930285
Target:  5'- cCC-CGAGCgccugGCGGACGCGCcgucgaacggcagcuGGGcGGc -3'
miRNA:   3'- uGGuGCUCGa----CGCCUGCGUG---------------UCCuUC- -5'
9137 5' -57.3 NC_002512.2 + 12391 0.66 0.928266
Target:  5'- cGCCuuCGGGCggcgGCGGcgGCGC-CGGGAu- -3'
miRNA:   3'- -UGGu-GCUCGa---CGCC--UGCGuGUCCUuc -5'
9137 5' -57.3 NC_002512.2 + 91885 0.66 0.928266
Target:  5'- -gCGCGGGCggcgGCGcGGCGCACGGc--- -3'
miRNA:   3'- ugGUGCUCGa---CGC-CUGCGUGUCcuuc -5'
9137 5' -57.3 NC_002512.2 + 183478 0.66 0.927755
Target:  5'- cACCAaggcCGuGCUGCGGGC-CGCcuacggccgcgagGGGGAGg -3'
miRNA:   3'- -UGGU----GCuCGACGCCUGcGUG-------------UCCUUC- -5'
9137 5' -57.3 NC_002512.2 + 107349 0.66 0.923059
Target:  5'- cGCgGCGAGCcugauguccaGCGG-CGCGcCGGGGAGc -3'
miRNA:   3'- -UGgUGCUCGa---------CGCCuGCGU-GUCCUUC- -5'
9137 5' -57.3 NC_002512.2 + 61 0.66 0.923059
Target:  5'- uGCgGCGucGGUcGCGGGCGCG-AGGAGGc -3'
miRNA:   3'- -UGgUGC--UCGaCGCCUGCGUgUCCUUC- -5'
9137 5' -57.3 NC_002512.2 + 229465 0.66 0.923059
Target:  5'- uGCgGCGucGGUcGCGGGCGCG-AGGAGGc -3'
miRNA:   3'- -UGgUGC--UCGaCGCCUGCGUgUCCUUC- -5'
9137 5' -57.3 NC_002512.2 + 113203 0.66 0.923059
Target:  5'- uCCGCGAGCgggaGcCGGGuccuCGCcCGGGGAGa -3'
miRNA:   3'- uGGUGCUCGa---C-GCCU----GCGuGUCCUUC- -5'
9137 5' -57.3 NC_002512.2 + 181851 0.66 0.923059
Target:  5'- aACaggaACGuguuGCUguaGCGGGCcagGCACAGGAAGu -3'
miRNA:   3'- -UGg---UGCu---CGA---CGCCUG---CGUGUCCUUC- -5'
9137 5' -57.3 NC_002512.2 + 227436 0.66 0.923059
Target:  5'- -gCGCGGGCcGCGGucaccuuCGCGCugccgGGGGAGa -3'
miRNA:   3'- ugGUGCUCGaCGCCu------GCGUG-----UCCUUC- -5'
9137 5' -57.3 NC_002512.2 + 224006 0.66 0.923059
Target:  5'- uCCACGAGCgacgaGuCGGACGaCGCccGGGAc- -3'
miRNA:   3'- uGGUGCUCGa----C-GCCUGC-GUG--UCCUuc -5'
9137 5' -57.3 NC_002512.2 + 191030 0.66 0.923059
Target:  5'- uGCCuGCGAgGCgggGCGcGGCGCACGuGGAc- -3'
miRNA:   3'- -UGG-UGCU-CGa--CGC-CUGCGUGU-CCUuc -5'
9137 5' -57.3 NC_002512.2 + 96295 0.66 0.917628
Target:  5'- uGCCGCGGGCcgccgccGCGGGCGgGCcGGucGc -3'
miRNA:   3'- -UGGUGCUCGa------CGCCUGCgUGuCCuuC- -5'
9137 5' -57.3 NC_002512.2 + 118306 0.66 0.917628
Target:  5'- uCCGggcCGAGCgcGCGGACGaCGagaGGGAGGa -3'
miRNA:   3'- uGGU---GCUCGa-CGCCUGC-GUg--UCCUUC- -5'
9137 5' -57.3 NC_002512.2 + 97210 0.66 0.917628
Target:  5'- gGCgGCGGGCcggGCGGgacgucgagGCGCugGGaGAGGa -3'
miRNA:   3'- -UGgUGCUCGa--CGCC---------UGCGugUC-CUUC- -5'
9137 5' -57.3 NC_002512.2 + 228080 0.66 0.917628
Target:  5'- gACgACGGGCUGCacACGguCGGGAGc -3'
miRNA:   3'- -UGgUGCUCGACGccUGCguGUCCUUc -5'
9137 5' -57.3 NC_002512.2 + 145263 0.66 0.917628
Target:  5'- cGCCugGAcgacgaccuGCUGCGGAUGaugaAGGAGu -3'
miRNA:   3'- -UGGugCU---------CGACGCCUGCgug-UCCUUc -5'
9137 5' -57.3 NC_002512.2 + 119405 0.66 0.917628
Target:  5'- gGCCGCGugccGCUGCucgggagcguGGAC-CGCGGGGAc -3'
miRNA:   3'- -UGGUGCu---CGACG----------CCUGcGUGUCCUUc -5'
9137 5' -57.3 NC_002512.2 + 195724 0.66 0.917628
Target:  5'- gACgGCGGGCaGaCGucGACGCACAGGuguAGa -3'
miRNA:   3'- -UGgUGCUCGaC-GC--CUGCGUGUCCu--UC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.