miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9140 3' -55.2 NC_002512.2 + 149140 0.66 0.973477
Target:  5'- -cCCGGGAcCCGGGACcgccGCGggGccGGUg -3'
miRNA:   3'- caGGCUCUuGGCCCUG----UGCaaCa-CCA- -5'
9140 3' -55.2 NC_002512.2 + 20774 0.66 0.973477
Target:  5'- aGUCCcGGAcguCGGGACACGggGUGa- -3'
miRNA:   3'- -CAGGcUCUug-GCCCUGUGCaaCACca -5'
9140 3' -55.2 NC_002512.2 + 224926 0.66 0.970775
Target:  5'- cGUCgCGGGGACCGGGuC-CGUgccGGUg -3'
miRNA:   3'- -CAG-GCUCUUGGCCCuGuGCAacaCCA- -5'
9140 3' -55.2 NC_002512.2 + 57047 0.66 0.970775
Target:  5'- cGUCCGAcGACCGGGGgGCGccg-GGc -3'
miRNA:   3'- -CAGGCUcUUGGCCCUgUGCaacaCCa -5'
9140 3' -55.2 NC_002512.2 + 52249 0.66 0.970775
Target:  5'- -aCCGAcguCCGGGAgGCGgaGUGGc -3'
miRNA:   3'- caGGCUcuuGGCCCUgUGCaaCACCa -5'
9140 3' -55.2 NC_002512.2 + 60351 0.66 0.970775
Target:  5'- -gCCGGGcAGCCGGGACcCGUUcgagcUGGa -3'
miRNA:   3'- caGGCUC-UUGGCCCUGuGCAAc----ACCa -5'
9140 3' -55.2 NC_002512.2 + 76106 0.66 0.970775
Target:  5'- -gCUGAG-GCgGGGGCGcCGggGUGGUg -3'
miRNA:   3'- caGGCUCuUGgCCCUGU-GCaaCACCA- -5'
9140 3' -55.2 NC_002512.2 + 102932 0.66 0.969928
Target:  5'- -aCUGGGAgcgccagagggucgACCGGGGCGCGggcgGGUa -3'
miRNA:   3'- caGGCUCU--------------UGGCCCUGUGCaacaCCA- -5'
9140 3' -55.2 NC_002512.2 + 6354 0.66 0.969641
Target:  5'- -gCCGGcGGGCCGcGGGCGCGUgccguucuccgccGUGGUc -3'
miRNA:   3'- caGGCU-CUUGGC-CCUGUGCAa------------CACCA- -5'
9140 3' -55.2 NC_002512.2 + 228404 0.66 0.967882
Target:  5'- uGUCCGGGGgacggggcGCUGGGGgGCGggGgcgGGa -3'
miRNA:   3'- -CAGGCUCU--------UGGCCCUgUGCaaCa--CCa -5'
9140 3' -55.2 NC_002512.2 + 95786 0.66 0.967882
Target:  5'- cGUCCGAGcgguaggcGCCGGGGCGCGg------ -3'
miRNA:   3'- -CAGGCUCu-------UGGCCCUGUGCaacacca -5'
9140 3' -55.2 NC_002512.2 + 49635 0.66 0.964791
Target:  5'- cGUCCGGgcGAGCCGGGACcagucggaccccACGUacgGGg -3'
miRNA:   3'- -CAGGCU--CUUGGCCCUG------------UGCAacaCCa -5'
9140 3' -55.2 NC_002512.2 + 127533 0.66 0.964791
Target:  5'- -cCCGAGAcugcagGCCGaGGACGCGcUUGUcGUa -3'
miRNA:   3'- caGGCUCU------UGGC-CCUGUGC-AACAcCA- -5'
9140 3' -55.2 NC_002512.2 + 86984 0.67 0.960121
Target:  5'- -gCCGuGAugUGGGACGCGgagaacuacacgGUGGa -3'
miRNA:   3'- caGGCuCUugGCCCUGUGCaa----------CACCa -5'
9140 3' -55.2 NC_002512.2 + 120632 0.67 0.959772
Target:  5'- uGUCCGAGAAacguccaccucuucCCGGGACACcagagccgGGUc -3'
miRNA:   3'- -CAGGCUCUU--------------GGCCCUGUGcaaca---CCA- -5'
9140 3' -55.2 NC_002512.2 + 7800 0.67 0.954281
Target:  5'- aGUCCGGGAACgGGGuccggggagcggACugGUUGagcGGa -3'
miRNA:   3'- -CAGGCUCUUGgCCC------------UGugCAACa--CCa -5'
9140 3' -55.2 NC_002512.2 + 209121 0.67 0.946203
Target:  5'- -cCCGAcguCCGGGACuGCGUcGUGGg -3'
miRNA:   3'- caGGCUcuuGGCCCUG-UGCAaCACCa -5'
9140 3' -55.2 NC_002512.2 + 18982 0.67 0.946203
Target:  5'- -gCCgGAGAGCCGGG-CGCaGUUG-GGg -3'
miRNA:   3'- caGG-CUCUUGGCCCuGUG-CAACaCCa -5'
9140 3' -55.2 NC_002512.2 + 136066 0.68 0.937239
Target:  5'- -aCCGAGAACCuGGGugGCGgcGUu-- -3'
miRNA:   3'- caGGCUCUUGG-CCCugUGCaaCAcca -5'
9140 3' -55.2 NC_002512.2 + 193545 0.68 0.937239
Target:  5'- aGUCCGcGGggUCGGG-CGC--UGUGGUg -3'
miRNA:   3'- -CAGGC-UCuuGGCCCuGUGcaACACCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.