miRNA display CGI


Results 1 - 20 of 597 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9140 5' -57.5 NC_002512.2 + 116465 0.66 0.943572
Target:  5'- gGGACGggGCgGUGaucccGGCGgcccacgcgcacuaCCGGACCc -3'
miRNA:   3'- -UCUGCuuUGgCGU-----CCGCag------------GGCCUGG- -5'
9140 5' -57.5 NC_002512.2 + 129394 0.66 0.943141
Target:  5'- cGACGA--CCGC-GGCcUCCCcaagguccGGGCCa -3'
miRNA:   3'- uCUGCUuuGGCGuCCGcAGGG--------CCUGG- -5'
9140 5' -57.5 NC_002512.2 + 1715 0.66 0.943141
Target:  5'- cGGACGguGCCGCucccgcuccGGC-UCCgcgUGGACCu -3'
miRNA:   3'- -UCUGCuuUGGCGu--------CCGcAGG---GCCUGG- -5'
9140 5' -57.5 NC_002512.2 + 102051 0.66 0.943141
Target:  5'- cGGCGGAcGCCGCcGaCGaccUCCCGGAgCCg -3'
miRNA:   3'- uCUGCUU-UGGCGuCcGC---AGGGCCU-GG- -5'
9140 5' -57.5 NC_002512.2 + 127924 0.66 0.943141
Target:  5'- aGGGCGGAuCgGUAGG-GUaCCCGaGGCCc -3'
miRNA:   3'- -UCUGCUUuGgCGUCCgCA-GGGC-CUGG- -5'
9140 5' -57.5 NC_002512.2 + 183196 0.66 0.943141
Target:  5'- gGGAcCGAGAUCGuCAcGGCa-CCCGaGACCg -3'
miRNA:   3'- -UCU-GCUUUGGC-GU-CCGcaGGGC-CUGG- -5'
9140 5' -57.5 NC_002512.2 + 225570 0.66 0.943141
Target:  5'- cGACGAGGCCGaccucgagGGGCG-CCgGGucuucgACCa -3'
miRNA:   3'- uCUGCUUUGGCg-------UCCGCaGGgCC------UGG- -5'
9140 5' -57.5 NC_002512.2 + 101966 0.66 0.943141
Target:  5'- -cGCGGGcCCGCcGGCGggCUCGuGGCCg -3'
miRNA:   3'- ucUGCUUuGGCGuCCGCa-GGGC-CUGG- -5'
9140 5' -57.5 NC_002512.2 + 157089 0.66 0.943141
Target:  5'- cGGCGcccACgGCGGGCccGUCCCGG-Cg -3'
miRNA:   3'- uCUGCuu-UGgCGUCCG--CAGGGCCuGg -5'
9140 5' -57.5 NC_002512.2 + 71263 0.66 0.943141
Target:  5'- gGGuCGGAGCCGUccaGGGcCG-CCaGGACCc -3'
miRNA:   3'- -UCuGCUUUGGCG---UCC-GCaGGgCCUGG- -5'
9140 5' -57.5 NC_002512.2 + 113172 0.66 0.943141
Target:  5'- cGGGCGGGACgCGaCcGGCGUCgCCGu-CCg -3'
miRNA:   3'- -UCUGCUUUG-GC-GuCCGCAG-GGCcuGG- -5'
9140 5' -57.5 NC_002512.2 + 95978 0.66 0.943141
Target:  5'- uGGCGcAGCgGCGgucGGCGUCCgGcGCCg -3'
miRNA:   3'- uCUGCuUUGgCGU---CCGCAGGgCcUGG- -5'
9140 5' -57.5 NC_002512.2 + 84840 0.66 0.943141
Target:  5'- uGGuCGAucucccGGCCGUcccGGGCGUugcgcgCCCGGGCg -3'
miRNA:   3'- -UCuGCU------UUGGCG---UCCGCA------GGGCCUGg -5'
9140 5' -57.5 NC_002512.2 + 212492 0.66 0.943141
Target:  5'- cGACGAcuccGACCuCGGGCuggaCgCGGACCa -3'
miRNA:   3'- uCUGCU----UUGGcGUCCGca--GgGCCUGG- -5'
9140 5' -57.5 NC_002512.2 + 90935 0.66 0.943141
Target:  5'- cGGGCGcGACCG-GGGCGUgCgUGGGCg -3'
miRNA:   3'- -UCUGCuUUGGCgUCCGCA-GgGCCUGg -5'
9140 5' -57.5 NC_002512.2 + 126528 0.66 0.943141
Target:  5'- cGGCGGccugaccucGACCGUgccguccgccccGGGCuacgccgCCCGGGCCu -3'
miRNA:   3'- uCUGCU---------UUGGCG------------UCCGca-----GGGCCUGG- -5'
9140 5' -57.5 NC_002512.2 + 106017 0.66 0.943141
Target:  5'- cGGGCGgcGCCGCcgggggugcGGCGUCCUcuccGCCa -3'
miRNA:   3'- -UCUGCuuUGGCGu--------CCGCAGGGcc--UGG- -5'
9140 5' -57.5 NC_002512.2 + 131733 0.66 0.943141
Target:  5'- cAGACGcggcGACCGCcgGGGCGggcggCCgCGacGACCa -3'
miRNA:   3'- -UCUGCu---UUGGCG--UCCGCa----GG-GC--CUGG- -5'
9140 5' -57.5 NC_002512.2 + 123176 0.66 0.943141
Target:  5'- gAGGcCGAGGCCG-AGGCGggaCgGGACg -3'
miRNA:   3'- -UCU-GCUUUGGCgUCCGCag-GgCCUGg -5'
9140 5' -57.5 NC_002512.2 + 212050 0.66 0.943141
Target:  5'- gGGA-GGAGCUGCuGGCGcacacCCUGGGCa -3'
miRNA:   3'- -UCUgCUUUGGCGuCCGCa----GGGCCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.