miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9143 3' -50.1 NC_002512.2 + 140241 0.66 0.999675
Target:  5'- -cGUCgaccgcUUcgUC-CGCCCCGUCGGc -3'
miRNA:   3'- acCAGaa----AAuaAGaGUGGGGCAGCCc -5'
9143 3' -50.1 NC_002512.2 + 208784 0.66 0.999675
Target:  5'- aGGUCcgcg--UCugagacggcggUCGCCCCGgagCGGGa -3'
miRNA:   3'- aCCAGaaaauaAG-----------AGUGGGGCa--GCCC- -5'
9143 3' -50.1 NC_002512.2 + 83887 0.66 0.999595
Target:  5'- cGGUCga------UCGCgUCGUCGGGg -3'
miRNA:   3'- aCCAGaaaauaagAGUGgGGCAGCCC- -5'
9143 3' -50.1 NC_002512.2 + 153719 0.66 0.999586
Target:  5'- cUGGUCggg---UCUCACggcgcugUCCGUgGGGg -3'
miRNA:   3'- -ACCAGaaaauaAGAGUG-------GGGCAgCCC- -5'
9143 3' -50.1 NC_002512.2 + 38998 0.66 0.999498
Target:  5'- cGGUUcgc----CUCGCCCCGcgacgCGGGg -3'
miRNA:   3'- aCCAGaaaauaaGAGUGGGGCa----GCCC- -5'
9143 3' -50.1 NC_002512.2 + 201440 0.66 0.999465
Target:  5'- gGGUCgucgcgaUCUCGgccucgaggugguCCCCGUCGGc -3'
miRNA:   3'- aCCAGaaaaua-AGAGU-------------GGGGCAGCCc -5'
9143 3' -50.1 NC_002512.2 + 170567 0.66 0.999381
Target:  5'- aGGUCgca-GUUCUC-CUCCGUCGc- -3'
miRNA:   3'- aCCAGaaaaUAAGAGuGGGGCAGCcc -5'
9143 3' -50.1 NC_002512.2 + 102584 0.66 0.999381
Target:  5'- cUGGUCUccauccUCUCcuCCUCGUCGGc -3'
miRNA:   3'- -ACCAGAaaaua-AGAGu-GGGGCAGCCc -5'
9143 3' -50.1 NC_002512.2 + 141996 0.67 0.99888
Target:  5'- cGGUCaacgaccgGUUgCUCGCCCUGUCGu- -3'
miRNA:   3'- aCCAGaaaa----UAA-GAGUGGGGCAGCcc -5'
9143 3' -50.1 NC_002512.2 + 104411 0.67 0.998067
Target:  5'- uUGGUCUcgUGUUCUUcaGCgUCGUCgauGGGg -3'
miRNA:   3'- -ACCAGAaaAUAAGAG--UGgGGCAG---CCC- -5'
9143 3' -50.1 NC_002512.2 + 152694 0.68 0.997705
Target:  5'- cGGUCUcg---UCgCGuCCCCGgUCGGGg -3'
miRNA:   3'- aCCAGAaaauaAGaGU-GGGGC-AGCCC- -5'
9143 3' -50.1 NC_002512.2 + 172255 0.68 0.996261
Target:  5'- cGGUCUgcucgcCUCACgCCCGcUCGGu -3'
miRNA:   3'- aCCAGAaaauaaGAGUG-GGGC-AGCCc -5'
9143 3' -50.1 NC_002512.2 + 131990 0.68 0.996261
Target:  5'- aGGUCgcgUGggC-CGCCCCGggcgcCGGGg -3'
miRNA:   3'- aCCAGaaaAUaaGaGUGGGGCa----GCCC- -5'
9143 3' -50.1 NC_002512.2 + 86618 0.68 0.995639
Target:  5'- cGGUCg---GUUcCUCGuCCUCGUCGGc -3'
miRNA:   3'- aCCAGaaaaUAA-GAGU-GGGGCAGCCc -5'
9143 3' -50.1 NC_002512.2 + 98099 0.69 0.993253
Target:  5'- gGGUCUUggucgccUUCcCGCCCCGcuugcCGGGg -3'
miRNA:   3'- aCCAGAAaau----AAGaGUGGGGCa----GCCC- -5'
9143 3' -50.1 NC_002512.2 + 120562 0.69 0.991151
Target:  5'- aGGUUgaa-GUUCUgACCCCGgaugcucugCGGGa -3'
miRNA:   3'- aCCAGaaaaUAAGAgUGGGGCa--------GCCC- -5'
9143 3' -50.1 NC_002512.2 + 79451 0.7 0.985422
Target:  5'- -uGUCUUUU-UUUUUAuUCCCGUCGGGg -3'
miRNA:   3'- acCAGAAAAuAAGAGU-GGGGCAGCCC- -5'
9143 3' -50.1 NC_002512.2 + 125625 0.71 0.974719
Target:  5'- gGGUCaggUAUUCggUCACCCgguuggccauCGUCGGGu -3'
miRNA:   3'- aCCAGaaaAUAAG--AGUGGG----------GCAGCCC- -5'
9143 3' -50.1 NC_002512.2 + 192429 0.74 0.90496
Target:  5'- cGGUCUc--GUUCUUcCCCCG-CGGGg -3'
miRNA:   3'- aCCAGAaaaUAAGAGuGGGGCaGCCC- -5'
9143 3' -50.1 NC_002512.2 + 137710 0.76 0.8634
Target:  5'- cGGUUgucc--UC-CACCCCGUCGGGu -3'
miRNA:   3'- aCCAGaaaauaAGaGUGGGGCAGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.