miRNA display CGI


Results 1 - 20 of 448 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9144 3' -65.1 NC_002512.2 + 56096 0.66 0.69893
Target:  5'- gCUGgaaGGCgGCCuuGUCCUCGuGCCCGGGg -3'
miRNA:   3'- gGGCag-CUG-CGG--CAGGGGC-CGGGCCU- -5'
9144 3' -65.1 NC_002512.2 + 403 0.66 0.69893
Target:  5'- cCCCGcCGccucuCGCC-UCCUCGcGCCCGcGAc -3'
miRNA:   3'- -GGGCaGCu----GCGGcAGGGGC-CGGGC-CU- -5'
9144 3' -65.1 NC_002512.2 + 3963 0.66 0.69893
Target:  5'- gUCGUCGuCGUCGUCCCCucGGUcgacgcgcuccUCGGGa -3'
miRNA:   3'- gGGCAGCuGCGGCAGGGG--CCG-----------GGCCU- -5'
9144 3' -65.1 NC_002512.2 + 205085 0.66 0.69893
Target:  5'- -gCGgCGGCGauCCGUCCUCGgggggcgcGCCCGGAc -3'
miRNA:   3'- ggGCaGCUGC--GGCAGGGGC--------CGGGCCU- -5'
9144 3' -65.1 NC_002512.2 + 102059 0.66 0.69893
Target:  5'- gCCGcCGACGaCC-UCCCgGaGCCgGGAc -3'
miRNA:   3'- gGGCaGCUGC-GGcAGGGgC-CGGgCCU- -5'
9144 3' -65.1 NC_002512.2 + 152173 0.66 0.69893
Target:  5'- aCUCGUgGGCGgCGUCUcguucacuugaCCGcGUCCGGAc -3'
miRNA:   3'- -GGGCAgCUGCgGCAGG-----------GGC-CGGGCCU- -5'
9144 3' -65.1 NC_002512.2 + 179174 0.66 0.69893
Target:  5'- cCCUGgCGAccuuCGCCGggUCCUCGGgCCGGu -3'
miRNA:   3'- -GGGCaGCU----GCGGC--AGGGGCCgGGCCu -5'
9144 3' -65.1 NC_002512.2 + 94966 0.66 0.69893
Target:  5'- aUCCGacaGACGCCG-CgCCGGUCCGc- -3'
miRNA:   3'- -GGGCag-CUGCGGCaGgGGCCGGGCcu -5'
9144 3' -65.1 NC_002512.2 + 91867 0.66 0.69893
Target:  5'- cCCCGagGcCGCCGU--CCGGCgCGGGc -3'
miRNA:   3'- -GGGCagCuGCGGCAggGGCCGgGCCU- -5'
9144 3' -65.1 NC_002512.2 + 14291 0.66 0.69893
Target:  5'- aCCCGgaCGACGCUGUCCUC--CCaCGGGu -3'
miRNA:   3'- -GGGCa-GCUGCGGCAGGGGccGG-GCCU- -5'
9144 3' -65.1 NC_002512.2 + 220396 0.66 0.69893
Target:  5'- gCCGUCGucuaccCGCCGcUCgCgGGCCCGc- -3'
miRNA:   3'- gGGCAGCu-----GCGGC-AGgGgCCGGGCcu -5'
9144 3' -65.1 NC_002512.2 + 229806 0.66 0.69893
Target:  5'- cCCCGcCGccucuCGCC-UCCUCGcGCCCGcGAc -3'
miRNA:   3'- -GGGCaGCu----GCGGcAGGGGC-CGGGC-CU- -5'
9144 3' -65.1 NC_002512.2 + 226642 0.66 0.69893
Target:  5'- gCCCG-CGGacCGUCGUCaCCCGacGCgCCGGGu -3'
miRNA:   3'- -GGGCaGCU--GCGGCAG-GGGC--CG-GGCCU- -5'
9144 3' -65.1 NC_002512.2 + 11044 0.66 0.69893
Target:  5'- cCUCGUCGGCGaaGUCgCagagcagGGCCgCGGAg -3'
miRNA:   3'- -GGGCAGCUGCggCAGgGg------CCGG-GCCU- -5'
9144 3' -65.1 NC_002512.2 + 219778 0.66 0.69893
Target:  5'- gCCCG-CG--GCCGg-CCCGGCCgGGGa -3'
miRNA:   3'- -GGGCaGCugCGGCagGGGCCGGgCCU- -5'
9144 3' -65.1 NC_002512.2 + 212994 0.66 0.69893
Target:  5'- aUCGUCGccGCgGCCGUCg--GGCCCGGGg -3'
miRNA:   3'- gGGCAGC--UG-CGGCAGgggCCGGGCCU- -5'
9144 3' -65.1 NC_002512.2 + 22001 0.66 0.69893
Target:  5'- aCCGcCGAgagcgccagaaGCCGUCCCCGGaCUCGc- -3'
miRNA:   3'- gGGCaGCUg----------CGGCAGGGGCC-GGGCcu -5'
9144 3' -65.1 NC_002512.2 + 225783 0.66 0.69893
Target:  5'- uCCCGagGcuGCGCCGg-CCgGGCCgCGGGc -3'
miRNA:   3'- -GGGCagC--UGCGGCagGGgCCGG-GCCU- -5'
9144 3' -65.1 NC_002512.2 + 172770 0.66 0.696227
Target:  5'- aCUGUCGGCGCaccccccgcuuccuCGUCCCgcuCGGUCagCGGAg -3'
miRNA:   3'- gGGCAGCUGCG--------------GCAGGG---GCCGG--GCCU- -5'
9144 3' -65.1 NC_002512.2 + 229407 0.66 0.689904
Target:  5'- aCCCGUCGugaGgGCCgGUCCUCcuccCCCGGGg -3'
miRNA:   3'- -GGGCAGC---UgCGG-CAGGGGcc--GGGCCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.