Results 1 - 20 of 448 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
9144 | 3' | -65.1 | NC_002512.2 | + | 11044 | 0.66 | 0.69893 |
Target: 5'- cCUCGUCGGCGaaGUCgCagagcagGGCCgCGGAg -3' miRNA: 3'- -GGGCAGCUGCggCAGgGg------CCGG-GCCU- -5' |
|||||||
9144 | 3' | -65.1 | NC_002512.2 | + | 91867 | 0.66 | 0.69893 |
Target: 5'- cCCCGagGcCGCCGU--CCGGCgCGGGc -3' miRNA: 3'- -GGGCagCuGCGGCAggGGCCGgGCCU- -5' |
|||||||
9144 | 3' | -65.1 | NC_002512.2 | + | 22001 | 0.66 | 0.69893 |
Target: 5'- aCCGcCGAgagcgccagaaGCCGUCCCCGGaCUCGc- -3' miRNA: 3'- gGGCaGCUg----------CGGCAGGGGCC-GGGCcu -5' |
|||||||
9144 | 3' | -65.1 | NC_002512.2 | + | 94966 | 0.66 | 0.69893 |
Target: 5'- aUCCGacaGACGCCG-CgCCGGUCCGc- -3' miRNA: 3'- -GGGCag-CUGCGGCaGgGGCCGGGCcu -5' |
|||||||
9144 | 3' | -65.1 | NC_002512.2 | + | 3963 | 0.66 | 0.69893 |
Target: 5'- gUCGUCGuCGUCGUCCCCucGGUcgacgcgcuccUCGGGa -3' miRNA: 3'- gGGCAGCuGCGGCAGGGG--CCG-----------GGCCU- -5' |
|||||||
9144 | 3' | -65.1 | NC_002512.2 | + | 220396 | 0.66 | 0.69893 |
Target: 5'- gCCGUCGucuaccCGCCGcUCgCgGGCCCGc- -3' miRNA: 3'- gGGCAGCu-----GCGGC-AGgGgCCGGGCcu -5' |
|||||||
9144 | 3' | -65.1 | NC_002512.2 | + | 152173 | 0.66 | 0.69893 |
Target: 5'- aCUCGUgGGCGgCGUCUcguucacuugaCCGcGUCCGGAc -3' miRNA: 3'- -GGGCAgCUGCgGCAGG-----------GGC-CGGGCCU- -5' |
|||||||
9144 | 3' | -65.1 | NC_002512.2 | + | 179174 | 0.66 | 0.69893 |
Target: 5'- cCCUGgCGAccuuCGCCGggUCCUCGGgCCGGu -3' miRNA: 3'- -GGGCaGCU----GCGGC--AGGGGCCgGGCCu -5' |
|||||||
9144 | 3' | -65.1 | NC_002512.2 | + | 226642 | 0.66 | 0.69893 |
Target: 5'- gCCCG-CGGacCGUCGUCaCCCGacGCgCCGGGu -3' miRNA: 3'- -GGGCaGCU--GCGGCAG-GGGC--CG-GGCCU- -5' |
|||||||
9144 | 3' | -65.1 | NC_002512.2 | + | 56096 | 0.66 | 0.69893 |
Target: 5'- gCUGgaaGGCgGCCuuGUCCUCGuGCCCGGGg -3' miRNA: 3'- gGGCag-CUG-CGG--CAGGGGC-CGGGCCU- -5' |
|||||||
9144 | 3' | -65.1 | NC_002512.2 | + | 225783 | 0.66 | 0.69893 |
Target: 5'- uCCCGagGcuGCGCCGg-CCgGGCCgCGGGc -3' miRNA: 3'- -GGGCagC--UGCGGCagGGgCCGG-GCCU- -5' |
|||||||
9144 | 3' | -65.1 | NC_002512.2 | + | 403 | 0.66 | 0.69893 |
Target: 5'- cCCCGcCGccucuCGCC-UCCUCGcGCCCGcGAc -3' miRNA: 3'- -GGGCaGCu----GCGGcAGGGGC-CGGGC-CU- -5' |
|||||||
9144 | 3' | -65.1 | NC_002512.2 | + | 205085 | 0.66 | 0.69893 |
Target: 5'- -gCGgCGGCGauCCGUCCUCGgggggcgcGCCCGGAc -3' miRNA: 3'- ggGCaGCUGC--GGCAGGGGC--------CGGGCCU- -5' |
|||||||
9144 | 3' | -65.1 | NC_002512.2 | + | 219778 | 0.66 | 0.69893 |
Target: 5'- gCCCG-CG--GCCGg-CCCGGCCgGGGa -3' miRNA: 3'- -GGGCaGCugCGGCagGGGCCGGgCCU- -5' |
|||||||
9144 | 3' | -65.1 | NC_002512.2 | + | 14291 | 0.66 | 0.69893 |
Target: 5'- aCCCGgaCGACGCUGUCCUC--CCaCGGGu -3' miRNA: 3'- -GGGCa-GCUGCGGCAGGGGccGG-GCCU- -5' |
|||||||
9144 | 3' | -65.1 | NC_002512.2 | + | 102059 | 0.66 | 0.69893 |
Target: 5'- gCCGcCGACGaCC-UCCCgGaGCCgGGAc -3' miRNA: 3'- gGGCaGCUGC-GGcAGGGgC-CGGgCCU- -5' |
|||||||
9144 | 3' | -65.1 | NC_002512.2 | + | 229806 | 0.66 | 0.69893 |
Target: 5'- cCCCGcCGccucuCGCC-UCCUCGcGCCCGcGAc -3' miRNA: 3'- -GGGCaGCu----GCGGcAGGGGC-CGGGC-CU- -5' |
|||||||
9144 | 3' | -65.1 | NC_002512.2 | + | 212994 | 0.66 | 0.69893 |
Target: 5'- aUCGUCGccGCgGCCGUCg--GGCCCGGGg -3' miRNA: 3'- gGGCAGC--UG-CGGCAGgggCCGGGCCU- -5' |
|||||||
9144 | 3' | -65.1 | NC_002512.2 | + | 172770 | 0.66 | 0.696227 |
Target: 5'- aCUGUCGGCGCaccccccgcuuccuCGUCCCgcuCGGUCagCGGAg -3' miRNA: 3'- gGGCAGCUGCG--------------GCAGGG---GCCGG--GCCU- -5' |
|||||||
9144 | 3' | -65.1 | NC_002512.2 | + | 229407 | 0.66 | 0.689904 |
Target: 5'- aCCCGUCGugaGgGCCgGUCCUCcuccCCCGGGg -3' miRNA: 3'- -GGGCAGC---UgCGG-CAGGGGcc--GGGCCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home