miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9144 5' -55.8 NC_002512.2 + 87644 1.11 0.003862
Target:  5'- gAUCCCAGAUCGGAGAUCCCGCGUUCCg -3'
miRNA:   3'- -UAGGGUCUAGCCUCUAGGGCGCAAGG- -5'
9144 5' -55.8 NC_002512.2 + 208141 0.81 0.283688
Target:  5'- aGUCCgCAGAUCGGAGcgGUCCgCGCGgUCCg -3'
miRNA:   3'- -UAGG-GUCUAGCCUC--UAGG-GCGCaAGG- -5'
9144 5' -55.8 NC_002512.2 + 80755 0.77 0.471655
Target:  5'- gGUCCCGGGUccCGGGGGUCCuCGCGgcUCg -3'
miRNA:   3'- -UAGGGUCUA--GCCUCUAGG-GCGCaaGG- -5'
9144 5' -55.8 NC_002512.2 + 221896 0.75 0.556736
Target:  5'- cUCCCAGAUCGGGGAUCggGCG--CCa -3'
miRNA:   3'- uAGGGUCUAGCCUCUAGggCGCaaGG- -5'
9144 5' -55.8 NC_002512.2 + 174271 0.75 0.57631
Target:  5'- gGUCCCGGGgucUCGGGGGU-UCGCGUUUCa -3'
miRNA:   3'- -UAGGGUCU---AGCCUCUAgGGCGCAAGG- -5'
9144 5' -55.8 NC_002512.2 + 58696 0.75 0.586155
Target:  5'- --aCCAGAUCGGcg--CCCGCGUUCUu -3'
miRNA:   3'- uagGGUCUAGCCucuaGGGCGCAAGG- -5'
9144 5' -55.8 NC_002512.2 + 49857 0.74 0.604944
Target:  5'- -cCUgGGAUCGGAGAUCCCgaGCGUgaucgagUCCc -3'
miRNA:   3'- uaGGgUCUAGCCUCUAGGG--CGCA-------AGG- -5'
9144 5' -55.8 NC_002512.2 + 82702 0.74 0.605935
Target:  5'- cGUCCguGcgCGGcgcGggCCCGCGUUCCg -3'
miRNA:   3'- -UAGGguCuaGCCu--CuaGGGCGCAAGG- -5'
9144 5' -55.8 NC_002512.2 + 174626 0.74 0.615855
Target:  5'- cUCCCAGGagCGGAGAggaUCUGCGUUCa -3'
miRNA:   3'- uAGGGUCUa-GCCUCUa--GGGCGCAAGg -5'
9144 5' -55.8 NC_002512.2 + 120425 0.73 0.67537
Target:  5'- -aCCCGGAccgaagaGGAGGUCCCGCcgUCCu -3'
miRNA:   3'- uaGGGUCUag-----CCUCUAGGGCGcaAGG- -5'
9144 5' -55.8 NC_002512.2 + 90331 0.73 0.694045
Target:  5'- uGUCCCAGGUUgagacguuggcgaGGAuGGUCuCCGCGUUUCc -3'
miRNA:   3'- -UAGGGUCUAG-------------CCU-CUAG-GGCGCAAGG- -5'
9144 5' -55.8 NC_002512.2 + 153347 0.73 0.695024
Target:  5'- -gUCCGGGUCGGcGGGUCCCGCuGggCUg -3'
miRNA:   3'- uaGGGUCUAGCC-UCUAGGGCG-CaaGG- -5'
9144 5' -55.8 NC_002512.2 + 152517 0.72 0.703807
Target:  5'- uUCCgGGGUCGG-GGUCUCggcgacgGCGUUCCg -3'
miRNA:   3'- uAGGgUCUAGCCuCUAGGG-------CGCAAGG- -5'
9144 5' -55.8 NC_002512.2 + 111110 0.72 0.752529
Target:  5'- -gCCCGGcggCGGAGGcgccgCCCGCGgggUCCu -3'
miRNA:   3'- uaGGGUCua-GCCUCUa----GGGCGCa--AGG- -5'
9144 5' -55.8 NC_002512.2 + 99222 0.72 0.752529
Target:  5'- cGUCCCGGuccUCGGAGAgcCCCGCGc--- -3'
miRNA:   3'- -UAGGGUCu--AGCCUCUa-GGGCGCaagg -5'
9144 5' -55.8 NC_002512.2 + 200553 0.71 0.761812
Target:  5'- gGUCgCGGuAUCGGGGGgaaucgcgCCCGCGgUCCg -3'
miRNA:   3'- -UAGgGUC-UAGCCUCUa-------GGGCGCaAGG- -5'
9144 5' -55.8 NC_002512.2 + 85654 0.71 0.780045
Target:  5'- uUCCaCGGGgguUCGGAGuacgucgcCCUGCGUUCCg -3'
miRNA:   3'- uAGG-GUCU---AGCCUCua------GGGCGCAAGG- -5'
9144 5' -55.8 NC_002512.2 + 3431 0.71 0.780045
Target:  5'- cUCCCGccucgcggggcuGGUCGGugacggcgacgaAGGUCCCGCG-UCCg -3'
miRNA:   3'- uAGGGU------------CUAGCC------------UCUAGGGCGCaAGG- -5'
9144 5' -55.8 NC_002512.2 + 195776 0.71 0.780045
Target:  5'- --aCCAGAUCGuGGGAUCCgGgggaUGUUCCa -3'
miRNA:   3'- uagGGUCUAGC-CUCUAGGgC----GCAAGG- -5'
9144 5' -55.8 NC_002512.2 + 161871 0.71 0.788979
Target:  5'- cUCCCGGGUCGGuGcGUCUCGuCGcUCCc -3'
miRNA:   3'- uAGGGUCUAGCCuC-UAGGGC-GCaAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.