miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9144 5' -55.8 NC_002512.2 + 3431 0.71 0.780045
Target:  5'- cUCCCGccucgcggggcuGGUCGGugacggcgacgaAGGUCCCGCG-UCCg -3'
miRNA:   3'- uAGGGU------------CUAGCC------------UCUAGGGCGCaAGG- -5'
9144 5' -55.8 NC_002512.2 + 5853 0.68 0.914213
Target:  5'- -cCCCGGcggccccGUCGGAG-UCCCggGCGUcgUCCg -3'
miRNA:   3'- uaGGGUC-------UAGCCUCuAGGG--CGCA--AGG- -5'
9144 5' -55.8 NC_002512.2 + 6958 0.68 0.920338
Target:  5'- --gCCAGGUCGuuGG-CCCGCGggCCg -3'
miRNA:   3'- uagGGUCUAGCcuCUaGGGCGCaaGG- -5'
9144 5' -55.8 NC_002512.2 + 8935 0.66 0.966803
Target:  5'- --gCCGGGUCGGcGAUgaagagCGCGUUCCg -3'
miRNA:   3'- uagGGUCUAGCCuCUAgg----GCGCAAGG- -5'
9144 5' -55.8 NC_002512.2 + 14908 0.69 0.8726
Target:  5'- cAUCCCgAGGUCGGcgucggucuggauccGGAcCCCGUGcgUCCg -3'
miRNA:   3'- -UAGGG-UCUAGCC---------------UCUaGGGCGCa-AGG- -5'
9144 5' -55.8 NC_002512.2 + 23093 0.67 0.948546
Target:  5'- gAUCCCGGAguucggcgugCGGAuGAUCgCGCuggacgaccccauGUUCCg -3'
miRNA:   3'- -UAGGGUCUa---------GCCU-CUAGgGCG-------------CAAGG- -5'
9144 5' -55.8 NC_002512.2 + 23993 0.68 0.902998
Target:  5'- gGUCCCGcGAgCGGGGA-CCCGCGa--- -3'
miRNA:   3'- -UAGGGU-CUaGCCUCUaGGGCGCaagg -5'
9144 5' -55.8 NC_002512.2 + 25310 0.66 0.95295
Target:  5'- -cCCCAG-UCGGGGucgCCCcaccggaggGCGUUCUu -3'
miRNA:   3'- uaGGGUCuAGCCUCua-GGG---------CGCAAGG- -5'
9144 5' -55.8 NC_002512.2 + 31928 0.66 0.964935
Target:  5'- uAUCUCAGAUUGGuGGUCCgaaauguuuuuauuuCGCGUcaugUCUa -3'
miRNA:   3'- -UAGGGUCUAGCCuCUAGG---------------GCGCA----AGG- -5'
9144 5' -55.8 NC_002512.2 + 34134 0.67 0.946457
Target:  5'- -cCCCAGGauccggccgacgaccUCGGAGcgguUCCCGCuccccUUCCa -3'
miRNA:   3'- uaGGGUCU---------------AGCCUCu---AGGGCGc----AAGG- -5'
9144 5' -55.8 NC_002512.2 + 34821 0.67 0.940312
Target:  5'- aGUCCCcGAcCGGAcGAcccucccgCCCGCGggCCg -3'
miRNA:   3'- -UAGGGuCUaGCCU-CUa-------GGGCGCaaGG- -5'
9144 5' -55.8 NC_002512.2 + 38449 0.66 0.966803
Target:  5'- -cCCCGGG-CGGAGugaacaugacuGUCCCGCccGggCCg -3'
miRNA:   3'- uaGGGUCUaGCCUC-----------UAGGGCG--CaaGG- -5'
9144 5' -55.8 NC_002512.2 + 38921 0.66 0.966803
Target:  5'- -gCCCGGAggggccgccgCGGcgGGcgCCCGCGUgcgCCc -3'
miRNA:   3'- uaGGGUCUa---------GCC--UCuaGGGCGCAa--GG- -5'
9144 5' -55.8 NC_002512.2 + 39452 0.68 0.920338
Target:  5'- cGUCCCGG-UCGGuGAcggCCCGC--UCCc -3'
miRNA:   3'- -UAGGGUCuAGCCuCUa--GGGCGcaAGG- -5'
9144 5' -55.8 NC_002512.2 + 45324 0.7 0.837921
Target:  5'- -cCCgCGGGUCGGAGGgccguccgccggCCCGCGccgCCg -3'
miRNA:   3'- uaGG-GUCUAGCCUCUa-----------GGGCGCaa-GG- -5'
9144 5' -55.8 NC_002512.2 + 45676 0.68 0.902998
Target:  5'- -cCCCAGA---GAGAaCCCGCGgUCCg -3'
miRNA:   3'- uaGGGUCUagcCUCUaGGGCGCaAGG- -5'
9144 5' -55.8 NC_002512.2 + 48680 0.68 0.905426
Target:  5'- gGUCCaCGuGUCGGAGAUCacgggcgaggaccaCGCGUUCg -3'
miRNA:   3'- -UAGG-GUcUAGCCUCUAGg-------------GCGCAAGg -5'
9144 5' -55.8 NC_002512.2 + 49857 0.74 0.604944
Target:  5'- -cCUgGGAUCGGAGAUCCCgaGCGUgaucgagUCCc -3'
miRNA:   3'- uaGGgUCUAGCCUCUAGGG--CGCA-------AGG- -5'
9144 5' -55.8 NC_002512.2 + 50494 0.68 0.896776
Target:  5'- -cCCCGGGugcguUCGGAaGUCCCGaCG-UCCa -3'
miRNA:   3'- uaGGGUCU-----AGCCUcUAGGGC-GCaAGG- -5'
9144 5' -55.8 NC_002512.2 + 58040 0.67 0.940312
Target:  5'- cUCCCGGccgCGGccGGAccgUCCCGCGguaCCg -3'
miRNA:   3'- uAGGGUCua-GCC--UCU---AGGGCGCaa-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.