miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9144 5' -55.8 NC_002512.2 + 58696 0.75 0.586155
Target:  5'- --aCCAGAUCGGcg--CCCGCGUUCUu -3'
miRNA:   3'- uagGGUCUAGCCucuaGGGCGCAAGG- -5'
9144 5' -55.8 NC_002512.2 + 5853 0.68 0.914213
Target:  5'- -cCCCGGcggccccGUCGGAG-UCCCggGCGUcgUCCg -3'
miRNA:   3'- uaGGGUC-------UAGCCUCuAGGG--CGCA--AGG- -5'
9144 5' -55.8 NC_002512.2 + 215630 0.68 0.909001
Target:  5'- gAUCUCGucgaGGAGAucggUCCUGCGUUCCc -3'
miRNA:   3'- -UAGGGUcuagCCUCU----AGGGCGCAAGG- -5'
9144 5' -55.8 NC_002512.2 + 48680 0.68 0.905426
Target:  5'- gGUCCaCGuGUCGGAGAUCacgggcgaggaccaCGCGUUCg -3'
miRNA:   3'- -UAGG-GUcUAGCCUCUAGg-------------GCGCAAGg -5'
9144 5' -55.8 NC_002512.2 + 23993 0.68 0.902998
Target:  5'- gGUCCCGcGAgCGGGGA-CCCGCGa--- -3'
miRNA:   3'- -UAGGGU-CUaGCCUCUaGGGCGCaagg -5'
9144 5' -55.8 NC_002512.2 + 45676 0.68 0.902998
Target:  5'- -cCCCAGA---GAGAaCCCGCGgUCCg -3'
miRNA:   3'- uaGGGUCUagcCUCUaGGGCGCaAGG- -5'
9144 5' -55.8 NC_002512.2 + 82027 0.68 0.896776
Target:  5'- -gCCCGGGUCGGGGucgcgCCgGCGgcggUCg -3'
miRNA:   3'- uaGGGUCUAGCCUCua---GGgCGCa---AGg -5'
9144 5' -55.8 NC_002512.2 + 14908 0.69 0.8726
Target:  5'- cAUCCCgAGGUCGGcgucggucuggauccGGAcCCCGUGcgUCCg -3'
miRNA:   3'- -UAGGG-UCUAGCC---------------UCUaGGGCGCa-AGG- -5'
9144 5' -55.8 NC_002512.2 + 178766 0.7 0.839511
Target:  5'- cGUCCCccuuGAUcacguaacguaaCGGGGAcUCCCGgGUUCCc -3'
miRNA:   3'- -UAGGGu---CUA------------GCCUCU-AGGGCgCAAGG- -5'
9144 5' -55.8 NC_002512.2 + 45324 0.7 0.837921
Target:  5'- -cCCgCGGGUCGGAGGgccguccgccggCCCGCGccgCCg -3'
miRNA:   3'- uaGG-GUCUAGCCUCUa-----------GGGCGCaa-GG- -5'
9144 5' -55.8 NC_002512.2 + 124006 0.7 0.831492
Target:  5'- --aCCGGGUgGGAGAcggaCCCGCGcgCCu -3'
miRNA:   3'- uagGGUCUAgCCUCUa---GGGCGCaaGG- -5'
9144 5' -55.8 NC_002512.2 + 195776 0.71 0.780045
Target:  5'- --aCCAGAUCGuGGGAUCCgGgggaUGUUCCa -3'
miRNA:   3'- uagGGUCUAGC-CUCUAGGgC----GCAAGG- -5'
9144 5' -55.8 NC_002512.2 + 3431 0.71 0.780045
Target:  5'- cUCCCGccucgcggggcuGGUCGGugacggcgacgaAGGUCCCGCG-UCCg -3'
miRNA:   3'- uAGGGU------------CUAGCC------------UCUAGGGCGCaAGG- -5'
9144 5' -55.8 NC_002512.2 + 85654 0.71 0.780045
Target:  5'- uUCCaCGGGgguUCGGAGuacgucgcCCUGCGUUCCg -3'
miRNA:   3'- uAGG-GUCU---AGCCUCua------GGGCGCAAGG- -5'
9144 5' -55.8 NC_002512.2 + 152517 0.72 0.703807
Target:  5'- uUCCgGGGUCGG-GGUCUCggcgacgGCGUUCCg -3'
miRNA:   3'- uAGGgUCUAGCCuCUAGGG-------CGCAAGG- -5'
9144 5' -55.8 NC_002512.2 + 90331 0.73 0.694045
Target:  5'- uGUCCCAGGUUgagacguuggcgaGGAuGGUCuCCGCGUUUCc -3'
miRNA:   3'- -UAGGGUCUAG-------------CCU-CUAG-GGCGCAAGG- -5'
9144 5' -55.8 NC_002512.2 + 174626 0.74 0.615855
Target:  5'- cUCCCAGGagCGGAGAggaUCUGCGUUCa -3'
miRNA:   3'- uAGGGUCUa-GCCUCUa--GGGCGCAAGg -5'
9144 5' -55.8 NC_002512.2 + 82702 0.74 0.605935
Target:  5'- cGUCCguGcgCGGcgcGggCCCGCGUUCCg -3'
miRNA:   3'- -UAGGguCuaGCCu--CuaGGGCGCAAGG- -5'
9144 5' -55.8 NC_002512.2 + 49857 0.74 0.604944
Target:  5'- -cCUgGGAUCGGAGAUCCCgaGCGUgaucgagUCCc -3'
miRNA:   3'- uaGGgUCUAGCCUCUAGGG--CGCA-------AGG- -5'
9144 5' -55.8 NC_002512.2 + 80755 0.77 0.471655
Target:  5'- gGUCCCGGGUccCGGGGGUCCuCGCGgcUCg -3'
miRNA:   3'- -UAGGGUCUA--GCCUCUAGG-GCGCaaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.