miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9144 5' -55.8 NC_002512.2 + 161871 0.71 0.788979
Target:  5'- cUCCCGGGUCGGuGcGUCUCGuCGcUCCc -3'
miRNA:   3'- uAGGGUCUAGCCuC-UAGGGC-GCaAGG- -5'
9144 5' -55.8 NC_002512.2 + 174539 0.71 0.79778
Target:  5'- cUCCUGGAUC-GAGAaCCaggaGCGUUCCa -3'
miRNA:   3'- uAGGGUCUAGcCUCUaGGg---CGCAAGG- -5'
9144 5' -55.8 NC_002512.2 + 157123 0.71 0.79778
Target:  5'- cUCCCGGcGUCGGGGGUCggCgGCGggCCc -3'
miRNA:   3'- uAGGGUC-UAGCCUCUAG--GgCGCaaGG- -5'
9144 5' -55.8 NC_002512.2 + 138119 0.71 0.79778
Target:  5'- -cCCUGGGggugaaggCGGAGAUCCCggagGCGUUCUu -3'
miRNA:   3'- uaGGGUCUa-------GCCUCUAGGG----CGCAAGG- -5'
9144 5' -55.8 NC_002512.2 + 202170 0.7 0.806439
Target:  5'- uUCCCGuGGUCgugacgGGAGAaCgCGCGUUCCg -3'
miRNA:   3'- uAGGGU-CUAG------CCUCUaGgGCGCAAGG- -5'
9144 5' -55.8 NC_002512.2 + 89328 0.7 0.823303
Target:  5'- --aCCAGGUCGGAGAgCUCGUGcaCCu -3'
miRNA:   3'- uagGGUCUAGCCUCUaGGGCGCaaGG- -5'
9144 5' -55.8 NC_002512.2 + 124006 0.7 0.831492
Target:  5'- --aCCGGGUgGGAGAcggaCCCGCGcgCCu -3'
miRNA:   3'- uagGGUCUAgCCUCUa---GGGCGCaaGG- -5'
9144 5' -55.8 NC_002512.2 + 45324 0.7 0.837921
Target:  5'- -cCCgCGGGUCGGAGGgccguccgccggCCCGCGccgCCg -3'
miRNA:   3'- uaGG-GUCUAGCCUCUa-----------GGGCGCaa-GG- -5'
9144 5' -55.8 NC_002512.2 + 153304 0.7 0.838717
Target:  5'- -gUCCGGGUCGGccGGuUCCCGCuggggugGUUCCg -3'
miRNA:   3'- uaGGGUCUAGCC--UCuAGGGCG-------CAAGG- -5'
9144 5' -55.8 NC_002512.2 + 178766 0.7 0.839511
Target:  5'- cGUCCCccuuGAUcacguaacguaaCGGGGAcUCCCGgGUUCCc -3'
miRNA:   3'- -UAGGGu---CUA------------GCCUCU-AGGGCgCAAGG- -5'
9144 5' -55.8 NC_002512.2 + 159376 0.7 0.839511
Target:  5'- cGUCCCAu-UCGcGGGUCCCGCGgcgUCg -3'
miRNA:   3'- -UAGGGUcuAGCcUCUAGGGCGCa--AGg -5'
9144 5' -55.8 NC_002512.2 + 180256 0.69 0.85501
Target:  5'- gGUCCCGGcucgccCGGAcGAUCCUcauggcggcgGCGUUCCc -3'
miRNA:   3'- -UAGGGUCua----GCCU-CUAGGG----------CGCAAGG- -5'
9144 5' -55.8 NC_002512.2 + 215509 0.69 0.85501
Target:  5'- cUCCguGGUCGGucccaaccucGAUCCCGCccUCCg -3'
miRNA:   3'- uAGGguCUAGCCu---------CUAGGGCGcaAGG- -5'
9144 5' -55.8 NC_002512.2 + 181660 0.69 0.85501
Target:  5'- cGUCCCGGuacagguaGUCGcgccccgcggccGGGAUCCCGCGggUCa -3'
miRNA:   3'- -UAGGGUC--------UAGC------------CUCUAGGGCGCaaGG- -5'
9144 5' -55.8 NC_002512.2 + 165456 0.69 0.869748
Target:  5'- -gCCCGcuuucugaucGAUCGGaAGAUCCCGaGUUUCg -3'
miRNA:   3'- uaGGGU----------CUAGCC-UCUAGGGCgCAAGG- -5'
9144 5' -55.8 NC_002512.2 + 109077 0.69 0.869748
Target:  5'- cGUCCCGGGUCcGAGAgaccgccgccgUCCCGCcg-CCc -3'
miRNA:   3'- -UAGGGUCUAGcCUCU-----------AGGGCGcaaGG- -5'
9144 5' -55.8 NC_002512.2 + 14908 0.69 0.8726
Target:  5'- cAUCCCgAGGUCGGcgucggucuggauccGGAcCCCGUGcgUCCg -3'
miRNA:   3'- -UAGGG-UCUAGCC---------------UCUaGGGCGCa-AGG- -5'
9144 5' -55.8 NC_002512.2 + 116455 0.69 0.876818
Target:  5'- -aCCCAGcUCGGGGAcggggcggugaUCCCgGCGgcCCa -3'
miRNA:   3'- uaGGGUCuAGCCUCU-----------AGGG-CGCaaGG- -5'
9144 5' -55.8 NC_002512.2 + 219620 0.68 0.896776
Target:  5'- uUCUCGGGcaUCGGGGuGUCCCGC-UUCUu -3'
miRNA:   3'- uAGGGUCU--AGCCUC-UAGGGCGcAAGG- -5'
9144 5' -55.8 NC_002512.2 + 50494 0.68 0.896776
Target:  5'- -cCCCGGGugcguUCGGAaGUCCCGaCG-UCCa -3'
miRNA:   3'- uaGGGUCU-----AGCCUcUAGGGC-GCaAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.