miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9144 5' -55.8 NC_002512.2 + 25310 0.66 0.95295
Target:  5'- -cCCCAG-UCGGGGucgCCCcaccggaggGCGUUCUu -3'
miRNA:   3'- uaGGGUCuAGCCUCua-GGG---------CGCAAGG- -5'
9144 5' -55.8 NC_002512.2 + 150510 0.66 0.95295
Target:  5'- -cCCgCGGGUCGGGGugcaguUCCaCGCGgcggCCg -3'
miRNA:   3'- uaGG-GUCUAGCCUCu-----AGG-GCGCaa--GG- -5'
9144 5' -55.8 NC_002512.2 + 192142 0.67 0.948958
Target:  5'- uUCuUCGGcgCGGgccAGAUCCCGCGgcCCc -3'
miRNA:   3'- uAG-GGUCuaGCC---UCUAGGGCGCaaGG- -5'
9144 5' -55.8 NC_002512.2 + 154321 0.67 0.948957
Target:  5'- -aCCgGGAUcCGGAGucgUCCGCGUcgucgUCCu -3'
miRNA:   3'- uaGGgUCUA-GCCUCua-GGGCGCA-----AGG- -5'
9144 5' -55.8 NC_002512.2 + 123963 0.67 0.948957
Target:  5'- -aCCC---UCGGGGcUCUgGCGUUCCg -3'
miRNA:   3'- uaGGGucuAGCCUCuAGGgCGCAAGG- -5'
9144 5' -55.8 NC_002512.2 + 23093 0.67 0.948546
Target:  5'- gAUCCCGGAguucggcgugCGGAuGAUCgCGCuggacgaccccauGUUCCg -3'
miRNA:   3'- -UAGGGUCUa---------GCCU-CUAGgGCG-------------CAAGG- -5'
9144 5' -55.8 NC_002512.2 + 34134 0.67 0.946457
Target:  5'- -cCCCAGGauccggccgacgaccUCGGAGcgguUCCCGCuccccUUCCa -3'
miRNA:   3'- uaGGGUCU---------------AGCCUCu---AGGGCGc----AAGG- -5'
9144 5' -55.8 NC_002512.2 + 167145 0.67 0.944746
Target:  5'- cUCCgAGGUCGGcGugcCCCGCGaggCCg -3'
miRNA:   3'- uAGGgUCUAGCCuCua-GGGCGCaa-GG- -5'
9144 5' -55.8 NC_002512.2 + 175440 0.67 0.944745
Target:  5'- cAUCCCGcGUCGGuGAUUCagaccCGUUCCa -3'
miRNA:   3'- -UAGGGUcUAGCCuCUAGGgc---GCAAGG- -5'
9144 5' -55.8 NC_002512.2 + 155256 0.67 0.940313
Target:  5'- -cCCCGGGccgucgcgCGGcGGUCUCGCGcUCCg -3'
miRNA:   3'- uaGGGUCUa-------GCCuCUAGGGCGCaAGG- -5'
9144 5' -55.8 NC_002512.2 + 58040 0.67 0.940312
Target:  5'- cUCCCGGccgCGGccGGAccgUCCCGCGguaCCg -3'
miRNA:   3'- uAGGGUCua-GCC--UCU---AGGGCGCaa-GG- -5'
9144 5' -55.8 NC_002512.2 + 34821 0.67 0.940312
Target:  5'- aGUCCCcGAcCGGAcGAcccucccgCCCGCGggCCg -3'
miRNA:   3'- -UAGGGuCUaGCCU-CUa-------GGGCGCaaGG- -5'
9144 5' -55.8 NC_002512.2 + 151799 0.67 0.935656
Target:  5'- cUCUCGGGcggUCgGGAGAgagaagcgCCCGaCGUUCCu -3'
miRNA:   3'- uAGGGUCU---AG-CCUCUa-------GGGC-GCAAGG- -5'
9144 5' -55.8 NC_002512.2 + 130471 0.67 0.935656
Target:  5'- cGUCCUGGGUCGGucGGggCCCGa--UCCg -3'
miRNA:   3'- -UAGGGUCUAGCC--UCuaGGGCgcaAGG- -5'
9144 5' -55.8 NC_002512.2 + 152122 0.67 0.935656
Target:  5'- -aCCCGGAgucUgGGGGAUCCUucgcgaGCGggugUCCg -3'
miRNA:   3'- uaGGGUCU---AgCCUCUAGGG------CGCa---AGG- -5'
9144 5' -55.8 NC_002512.2 + 82622 0.67 0.935656
Target:  5'- cGUCCCGGGUCGGGuuUCCCaC-UUCUc -3'
miRNA:   3'- -UAGGGUCUAGCCUcuAGGGcGcAAGG- -5'
9144 5' -55.8 NC_002512.2 + 95170 0.67 0.935656
Target:  5'- cGUCCUcgcguAGG-CGGAGAgcgCCCGCGagaggacgUCCg -3'
miRNA:   3'- -UAGGG-----UCUaGCCUCUa--GGGCGCa-------AGG- -5'
9144 5' -55.8 NC_002512.2 + 135816 0.67 0.935656
Target:  5'- cGUCgCGGGgggaGGAgGGUCCCGCGcccUUCCc -3'
miRNA:   3'- -UAGgGUCUag--CCU-CUAGGGCGC---AAGG- -5'
9144 5' -55.8 NC_002512.2 + 191653 0.67 0.930775
Target:  5'- --gCCAGGacggCGGAGAcgUCCGCGUcCCg -3'
miRNA:   3'- uagGGUCUa---GCCUCUa-GGGCGCAaGG- -5'
9144 5' -55.8 NC_002512.2 + 131690 0.67 0.930775
Target:  5'- gGUCCCcgAGAacgccaucccUCGGAcGGUCgCCGCGcccgUCCa -3'
miRNA:   3'- -UAGGG--UCU----------AGCCU-CUAG-GGCGCa---AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.