miRNA display CGI


Results 1 - 20 of 300 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9145 3' -60.8 NC_002512.2 + 100653 0.65 0.816056
Target:  5'- gCGCAGCaGUCCcgcgaucGCGCGuucguucuccgcGGCCAGCGGc -3'
miRNA:   3'- -GCGUCG-CGGG-------CGCGCuu----------CUGGUCGUC- -5'
9145 3' -60.8 NC_002512.2 + 81825 0.66 0.815236
Target:  5'- cCGCGGCGCguccgaucugccggaCCGgGuCGggGAgcgUCGGCGGg -3'
miRNA:   3'- -GCGUCGCG---------------GGCgC-GCuuCU---GGUCGUC- -5'
9145 3' -60.8 NC_002512.2 + 109002 0.66 0.811939
Target:  5'- uCGuCGGCGCCgGCgGCGucGuCCuGCGGa -3'
miRNA:   3'- -GC-GUCGCGGgCG-CGCuuCuGGuCGUC- -5'
9145 3' -60.8 NC_002512.2 + 201859 0.66 0.811939
Target:  5'- uCGCcuGGgGCCUGCGgucCGAGGACggCGGCGGc -3'
miRNA:   3'- -GCG--UCgCGGGCGC---GCUUCUG--GUCGUC- -5'
9145 3' -60.8 NC_002512.2 + 175278 0.66 0.811939
Target:  5'- aGCuGGCGgCCGCGUacacguacucGggGugCAGCGu -3'
miRNA:   3'- gCG-UCGCgGGCGCG----------CuuCugGUCGUc -5'
9145 3' -60.8 NC_002512.2 + 83975 0.66 0.811939
Target:  5'- gGCGGaUGCCCgGCGCGggGcggucGCgCAGCu- -3'
miRNA:   3'- gCGUC-GCGGG-CGCGCuuC-----UG-GUCGuc -5'
9145 3' -60.8 NC_002512.2 + 144620 0.66 0.811939
Target:  5'- gCGCcGCGCUgGaCGUGgcGGCCAcGCGGc -3'
miRNA:   3'- -GCGuCGCGGgC-GCGCuuCUGGU-CGUC- -5'
9145 3' -60.8 NC_002512.2 + 219679 0.66 0.811939
Target:  5'- --gGGCGCgCCGCcCGAGGACgAGgAGg -3'
miRNA:   3'- gcgUCGCG-GGCGcGCUUCUGgUCgUC- -5'
9145 3' -60.8 NC_002512.2 + 156078 0.66 0.811939
Target:  5'- aCGCcgGGCGCCgGCaguucguCGAGGACUcGCAGc -3'
miRNA:   3'- -GCG--UCGCGGgCGc------GCUUCUGGuCGUC- -5'
9145 3' -60.8 NC_002512.2 + 58211 0.66 0.811939
Target:  5'- gCGCGGCGCgcaccCCGCGCGcguAGAuguCCcGCAa -3'
miRNA:   3'- -GCGUCGCG-----GGCGCGCu--UCU---GGuCGUc -5'
9145 3' -60.8 NC_002512.2 + 39804 0.66 0.811939
Target:  5'- cCGCAGCcgaGCCCGCugacCGGccgcGGCCAGCu- -3'
miRNA:   3'- -GCGUCG---CGGGCGc---GCUu---CUGGUCGuc -5'
9145 3' -60.8 NC_002512.2 + 106753 0.66 0.811939
Target:  5'- gGCGGCGCuCCGCGUccggcucucGGCCcGCGGc -3'
miRNA:   3'- gCGUCGCG-GGCGCGcuu------CUGGuCGUC- -5'
9145 3' -60.8 NC_002512.2 + 21215 0.66 0.811939
Target:  5'- aGCGGCccccgggacgccGCCCgGgGCGGAGACgggGGCGGa -3'
miRNA:   3'- gCGUCG------------CGGG-CgCGCUUCUGg--UCGUC- -5'
9145 3' -60.8 NC_002512.2 + 82350 0.66 0.811939
Target:  5'- aGCGGUGggCGUGCGggGG-CGGCGGa -3'
miRNA:   3'- gCGUCGCggGCGCGCuuCUgGUCGUC- -5'
9145 3' -60.8 NC_002512.2 + 128838 0.66 0.811939
Target:  5'- gCGCAGCuGCaCCGCuCGGGcGCCGcGCGGg -3'
miRNA:   3'- -GCGUCG-CG-GGCGcGCUUcUGGU-CGUC- -5'
9145 3' -60.8 NC_002512.2 + 139295 0.66 0.803595
Target:  5'- gGgGGCGCCCGCcccgggggaaGGAGACCGGgGc -3'
miRNA:   3'- gCgUCGCGGGCGcg--------CUUCUGGUCgUc -5'
9145 3' -60.8 NC_002512.2 + 206871 0.66 0.803595
Target:  5'- gGCGGCGCCgaGCuCGccGACgGGUAGg -3'
miRNA:   3'- gCGUCGCGGg-CGcGCuuCUGgUCGUC- -5'
9145 3' -60.8 NC_002512.2 + 28059 0.66 0.803595
Target:  5'- cCGCGGaaggaGCCCccggGCGCGgcGGagaCGGCGGa -3'
miRNA:   3'- -GCGUCg----CGGG----CGCGCuuCUg--GUCGUC- -5'
9145 3' -60.8 NC_002512.2 + 24922 0.66 0.803595
Target:  5'- cCGCGGCgucgggcucgGCCCGCaGCGAcgaGGAacguCCAGgAGg -3'
miRNA:   3'- -GCGUCG----------CGGGCG-CGCU---UCU----GGUCgUC- -5'
9145 3' -60.8 NC_002512.2 + 121142 0.66 0.802753
Target:  5'- gCGCcGCGCacugccuCCGCGaGAAGGCCuGCAc -3'
miRNA:   3'- -GCGuCGCG-------GGCGCgCUUCUGGuCGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.