miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9145 5' -51.1 NC_002512.2 + 128469 0.65 0.998013
Target:  5'- cGGCCGCCG-CUGUGCccucggaaGCGg- -3'
miRNA:   3'- -CCGGCGGCaGACGCGuauaua--UGUau -5'
9145 5' -51.1 NC_002512.2 + 121683 0.66 0.997384
Target:  5'- cGCCGCCGa--GUGCAUAggagACGUGg -3'
miRNA:   3'- cCGGCGGCagaCGCGUAUaua-UGUAU- -5'
9145 5' -51.1 NC_002512.2 + 112384 0.66 0.997384
Target:  5'- -aCCGCCGUCaGCGCGaacccgggAUGCAg- -3'
miRNA:   3'- ccGGCGGCAGaCGCGUaua-----UAUGUau -5'
9145 5' -51.1 NC_002512.2 + 108757 0.66 0.997384
Target:  5'- cGGCCGCCGUCgacGgGUucggGUACcgAu -3'
miRNA:   3'- -CCGGCGGCAGa--CgCGuauaUAUGuaU- -5'
9145 5' -51.1 NC_002512.2 + 158757 0.66 0.996911
Target:  5'- uGGCCGCCcugCUGCGCGa--------- -3'
miRNA:   3'- -CCGGCGGca-GACGCGUauauauguau -5'
9145 5' -51.1 NC_002512.2 + 228823 0.66 0.996911
Target:  5'- cGGCCGCCGgugCUGcCGUcuuAUAguccGUGCGa- -3'
miRNA:   3'- -CCGGCGGCa--GAC-GCG---UAUa---UAUGUau -5'
9145 5' -51.1 NC_002512.2 + 110185 0.66 0.996911
Target:  5'- cGGCCgGCCGcuUCUcgcGCGCAgggGUGCGg- -3'
miRNA:   3'- -CCGG-CGGC--AGA---CGCGUauaUAUGUau -5'
9145 5' -51.1 NC_002512.2 + 6431 0.66 0.996911
Target:  5'- aGGCgGCCGUCUggcggGCGCcgAg--ACAg- -3'
miRNA:   3'- -CCGgCGGCAGA-----CGCGuaUauaUGUau -5'
9145 5' -51.1 NC_002512.2 + 157770 0.66 0.996861
Target:  5'- cGGUCGCUGgucagCUGuCGCAUcaagaaccgggcgGUGUGCAg- -3'
miRNA:   3'- -CCGGCGGCa----GAC-GCGUA-------------UAUAUGUau -5'
9145 5' -51.1 NC_002512.2 + 135250 0.66 0.996134
Target:  5'- aGGCCGUCGUCcGCGCcgcgcucgACGa- -3'
miRNA:   3'- -CCGGCGGCAGaCGCGuauaua--UGUau -5'
9145 5' -51.1 NC_002512.2 + 59100 0.66 0.995755
Target:  5'- cGCCGCCGUCgucGCGCcgAUc-GCGc- -3'
miRNA:   3'- cCGGCGGCAGa--CGCGuaUAuaUGUau -5'
9145 5' -51.1 NC_002512.2 + 216390 0.66 0.995755
Target:  5'- uGGCCGCCGUCUcCGUGUuguUcgGCc-- -3'
miRNA:   3'- -CCGGCGGCAGAcGCGUAu--AuaUGuau -5'
9145 5' -51.1 NC_002512.2 + 121741 0.66 0.995755
Target:  5'- aGGCCcuccguccuGUCGUCUGCGaCAUGUGgGCc-- -3'
miRNA:   3'- -CCGG---------CGGCAGACGC-GUAUAUaUGuau -5'
9145 5' -51.1 NC_002512.2 + 158311 0.67 0.995057
Target:  5'- aGGCCGCgGUCguccgGCGCGaGUccGCGc- -3'
miRNA:   3'- -CCGGCGgCAGa----CGCGUaUAuaUGUau -5'
9145 5' -51.1 NC_002512.2 + 112868 0.67 0.994267
Target:  5'- cGGCCGCCGaugaUCuUGCGCccgcccUGCGUGc -3'
miRNA:   3'- -CCGGCGGC----AG-ACGCGuauau-AUGUAU- -5'
9145 5' -51.1 NC_002512.2 + 106772 0.67 0.99338
Target:  5'- cGGCCGCCGaCgGCGCGgg---ACGg- -3'
miRNA:   3'- -CCGGCGGCaGaCGCGUauauaUGUau -5'
9145 5' -51.1 NC_002512.2 + 129624 0.67 0.993285
Target:  5'- aGGCCGUCGaccgcuuUCgGUGCAUAUAUAa--- -3'
miRNA:   3'- -CCGGCGGC-------AGaCGCGUAUAUAUguau -5'
9145 5' -51.1 NC_002512.2 + 142316 0.67 0.992385
Target:  5'- cGUCGCCGUCUGCGgAgaga-ACAg- -3'
miRNA:   3'- cCGGCGGCAGACGCgUauauaUGUau -5'
9145 5' -51.1 NC_002512.2 + 199935 0.67 0.992385
Target:  5'- cGGCCGCCGcucaccggCUGUccaGCAUgAUGUugAUGc -3'
miRNA:   3'- -CCGGCGGCa-------GACG---CGUA-UAUAugUAU- -5'
9145 5' -51.1 NC_002512.2 + 117363 0.68 0.990041
Target:  5'- cGCCGCCGUCUGCaacaGCAacucgucccUGgacGUGCAc- -3'
miRNA:   3'- cCGGCGGCAGACG----CGU---------AUa--UAUGUau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.