miRNA display CGI


Results 1 - 20 of 416 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9146 3' -62.7 NC_002512.2 + 106968 0.66 0.774826
Target:  5'- -cUCGUCCUCGUCGUaguagaugcCGuCGUCCUCGUc -3'
miRNA:   3'- guGGUAGGGGCAGCA---------GC-GCGGGGGCG- -5'
9146 3' -62.7 NC_002512.2 + 77432 0.66 0.774826
Target:  5'- aCGCC-UCCCaa-CGcCGCGCgCCCGUc -3'
miRNA:   3'- -GUGGuAGGGgcaGCaGCGCGgGGGCG- -5'
9146 3' -62.7 NC_002512.2 + 215042 0.66 0.774826
Target:  5'- uGCUGUCCCgaggagcucacCGUCGUCggcgGCGUCUaCCGCg -3'
miRNA:   3'- gUGGUAGGG-----------GCAGCAG----CGCGGG-GGCG- -5'
9146 3' -62.7 NC_002512.2 + 102590 0.66 0.774826
Target:  5'- -uCCAUCCUCuccuccUCGUCG-GCCgCCGCc -3'
miRNA:   3'- guGGUAGGGGc-----AGCAGCgCGGgGGCG- -5'
9146 3' -62.7 NC_002512.2 + 220799 0.66 0.774826
Target:  5'- gAUCGUCCUCGaccCGcUCGUGgUCCCGCc -3'
miRNA:   3'- gUGGUAGGGGCa--GC-AGCGCgGGGGCG- -5'
9146 3' -62.7 NC_002512.2 + 123656 0.66 0.774826
Target:  5'- cCGCgGUUCCCGcgCG-CGCGCCgccauggCCGCg -3'
miRNA:   3'- -GUGgUAGGGGCa-GCaGCGCGGg------GGCG- -5'
9146 3' -62.7 NC_002512.2 + 103533 0.66 0.774826
Target:  5'- gACCGUgaaCgCGUCGUgCGCGCCCgucccggaCGCg -3'
miRNA:   3'- gUGGUAg--GgGCAGCA-GCGCGGGg-------GCG- -5'
9146 3' -62.7 NC_002512.2 + 209742 0.66 0.774826
Target:  5'- cCACC-UUCCgGUacggacagcCGUCGCGCUCCgCGUc -3'
miRNA:   3'- -GUGGuAGGGgCA---------GCAGCGCGGGG-GCG- -5'
9146 3' -62.7 NC_002512.2 + 40066 0.66 0.774826
Target:  5'- gACgAgacUCCaCCGUC-UCGUGUCCCCGg -3'
miRNA:   3'- gUGgU---AGG-GGCAGcAGCGCGGGGGCg -5'
9146 3' -62.7 NC_002512.2 + 147523 0.66 0.774826
Target:  5'- gCAgCAUCaCCC-UC--CGcCGCCCCCGCa -3'
miRNA:   3'- -GUgGUAG-GGGcAGcaGC-GCGGGGGCG- -5'
9146 3' -62.7 NC_002512.2 + 223980 0.66 0.774826
Target:  5'- gGCCGuaUCCCC-----CGCGCgCCCCGCc -3'
miRNA:   3'- gUGGU--AGGGGcagcaGCGCG-GGGGCG- -5'
9146 3' -62.7 NC_002512.2 + 12765 0.66 0.774826
Target:  5'- cCGCUGcugCCgCCGcaggacUCGgcgGCGCCCCCGCu -3'
miRNA:   3'- -GUGGUa--GG-GGC------AGCag-CGCGGGGGCG- -5'
9146 3' -62.7 NC_002512.2 + 97811 0.66 0.774826
Target:  5'- -uCCggCUCCGUCGaCGgGCUCCUGUu -3'
miRNA:   3'- guGGuaGGGGCAGCaGCgCGGGGGCG- -5'
9146 3' -62.7 NC_002512.2 + 86161 0.66 0.773966
Target:  5'- cCGCCuccgaggCCCUgcugcgggagcugGagGUCGCGCCCuCCGUg -3'
miRNA:   3'- -GUGGua-----GGGG-------------CagCAGCGCGGG-GGCG- -5'
9146 3' -62.7 NC_002512.2 + 130545 0.66 0.766185
Target:  5'- cCACCGUCCggaugcucgUCGaggaguUCGUCGUagGCCgCCGCg -3'
miRNA:   3'- -GUGGUAGG---------GGC------AGCAGCG--CGGgGGCG- -5'
9146 3' -62.7 NC_002512.2 + 84492 0.66 0.766185
Target:  5'- gACCcggaCCCCGgacgccgCGUCGgGCUCCCa- -3'
miRNA:   3'- gUGGua--GGGGCa------GCAGCgCGGGGGcg -5'
9146 3' -62.7 NC_002512.2 + 80464 0.66 0.766185
Target:  5'- gCGCCcgCCCC--CGcCGCGgucCCCUCGCg -3'
miRNA:   3'- -GUGGuaGGGGcaGCaGCGC---GGGGGCG- -5'
9146 3' -62.7 NC_002512.2 + 19481 0.66 0.766185
Target:  5'- uCGCC-UCCCCGcCG-CGUucCCCaCCGCg -3'
miRNA:   3'- -GUGGuAGGGGCaGCaGCGc-GGG-GGCG- -5'
9146 3' -62.7 NC_002512.2 + 38548 0.66 0.766185
Target:  5'- gACCuacCCCCGUCGcggacggcaccCGCGUCccgaCCCGCg -3'
miRNA:   3'- gUGGua-GGGGCAGCa----------GCGCGG----GGGCG- -5'
9146 3' -62.7 NC_002512.2 + 137833 0.66 0.766185
Target:  5'- aGCguUCCagggCGUC-UCGCaGCUCCCGCg -3'
miRNA:   3'- gUGguAGGg---GCAGcAGCG-CGGGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.