miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9146 5' -58.9 NC_002512.2 + 87806 0.66 0.870078
Target:  5'- uGUGuCGucGAGGCGGGcGGGcGGUCGgAg -3'
miRNA:   3'- -UAC-GCuuCUCCGCCC-CUC-CUAGCgUg -5'
9146 5' -58.9 NC_002512.2 + 95834 0.66 0.869364
Target:  5'- -gGCGAcggcccgcaGGAGGcCGGGGgcggcguccucccAGGGcCGCGCg -3'
miRNA:   3'- uaCGCU---------UCUCC-GCCCC-------------UCCUaGCGUG- -5'
9146 5' -58.9 NC_002512.2 + 219824 0.66 0.867209
Target:  5'- -cGCGAcagggggucggucgGGGGGUccggcccGGGGGcGGAUCGCGg -3'
miRNA:   3'- uaCGCU--------------UCUCCG-------CCCCU-CCUAGCGUg -5'
9146 5' -58.9 NC_002512.2 + 98098 0.66 0.862847
Target:  5'- gAUGaCGggGAcGGCGcGGGAcGAccucgUCGCGCu -3'
miRNA:   3'- -UAC-GCuuCU-CCGC-CCCUcCU-----AGCGUG- -5'
9146 5' -58.9 NC_002512.2 + 196409 0.66 0.862847
Target:  5'- -cGCGggGAcGCGGGGGgcggcggccGGGUCGgGa -3'
miRNA:   3'- uaCGCuuCUcCGCCCCU---------CCUAGCgUg -5'
9146 5' -58.9 NC_002512.2 + 219942 0.66 0.862847
Target:  5'- -cGCGcGGGGGagGGuGGAucccccGGGUCGCGCg -3'
miRNA:   3'- uaCGCuUCUCCg-CC-CCU------CCUAGCGUG- -5'
9146 5' -58.9 NC_002512.2 + 103056 0.66 0.862847
Target:  5'- -gGC-AGGAGcGCGGGGAacGGcaccUCGCACu -3'
miRNA:   3'- uaCGcUUCUC-CGCCCCU--CCu---AGCGUG- -5'
9146 5' -58.9 NC_002512.2 + 18840 0.66 0.855421
Target:  5'- -aGCGAgcGGAGGUagcgGGGGAcGGcCGCGCa -3'
miRNA:   3'- uaCGCU--UCUCCG----CCCCUcCUaGCGUG- -5'
9146 5' -58.9 NC_002512.2 + 15205 0.66 0.855421
Target:  5'- -aGgGGAGAGaGCGGGaGGgcGGGUCGC-Cg -3'
miRNA:   3'- uaCgCUUCUC-CGCCC-CU--CCUAGCGuG- -5'
9146 5' -58.9 NC_002512.2 + 89420 0.66 0.855421
Target:  5'- -cGCGAGGcGGCGugacGGAGaGGUgGCGCg -3'
miRNA:   3'- uaCGCUUCuCCGCc---CCUC-CUAgCGUG- -5'
9146 5' -58.9 NC_002512.2 + 123160 0.66 0.855421
Target:  5'- -gGcCGAGGAGGCGGacAGGAgCGCGg -3'
miRNA:   3'- uaC-GCUUCUCCGCCccUCCUaGCGUg -5'
9146 5' -58.9 NC_002512.2 + 191756 0.66 0.847807
Target:  5'- gGUGUGAcGAuaCGGGGAcGGAUCGCcCg -3'
miRNA:   3'- -UACGCUuCUccGCCCCU-CCUAGCGuG- -5'
9146 5' -58.9 NC_002512.2 + 119549 0.66 0.847807
Target:  5'- -gGCGggGA-GCGGGGAccgggcGGAcCGCGg -3'
miRNA:   3'- uaCGCuuCUcCGCCCCU------CCUaGCGUg -5'
9146 5' -58.9 NC_002512.2 + 74908 0.66 0.847036
Target:  5'- -cGCGAcggacgcGGAGGCccGGaGGcGGAUCGCGg -3'
miRNA:   3'- uaCGCU-------UCUCCG--CC-CCuCCUAGCGUg -5'
9146 5' -58.9 NC_002512.2 + 48800 0.66 0.84001
Target:  5'- -gGCGucGcGGCacaGGGaGAGGAUCGCGa -3'
miRNA:   3'- uaCGCuuCuCCG---CCC-CUCCUAGCGUg -5'
9146 5' -58.9 NC_002512.2 + 82430 0.66 0.84001
Target:  5'- -gGCGGAGGGGaCGaGGGGGcGUCGguCc -3'
miRNA:   3'- uaCGCUUCUCC-GC-CCCUCcUAGCguG- -5'
9146 5' -58.9 NC_002512.2 + 131851 0.66 0.84001
Target:  5'- -cGCG-AGAGGgGGGGAGaGAggGC-Cg -3'
miRNA:   3'- uaCGCuUCUCCgCCCCUC-CUagCGuG- -5'
9146 5' -58.9 NC_002512.2 + 189900 0.66 0.84001
Target:  5'- -gGCGAGGAcGGCGGcGAGGAcgGCGg -3'
miRNA:   3'- uaCGCUUCU-CCGCCcCUCCUagCGUg -5'
9146 5' -58.9 NC_002512.2 + 221283 0.66 0.84001
Target:  5'- -cGCGuGGAGGgGGGGgaggccGGGGUCGgCGg -3'
miRNA:   3'- uaCGCuUCUCCgCCCC------UCCUAGC-GUg -5'
9146 5' -58.9 NC_002512.2 + 84950 0.66 0.84001
Target:  5'- -cGUGAcGuGGGUGGGGAucGGGUCGC-Cg -3'
miRNA:   3'- uaCGCUuC-UCCGCCCCU--CCUAGCGuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.