miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9147 3' -48.4 NC_002512.2 + 112921 0.66 0.999956
Target:  5'- ---cGggGCGUCGGc--GGCCcgGUGGCg -3'
miRNA:   3'- aguuCuuUGCAGCCuauCUGG--CACUG- -5'
9147 3' -48.4 NC_002512.2 + 227349 0.66 0.999956
Target:  5'- -gGAGAGACGggaCGGAggaggcccgGGGCCGccGGCg -3'
miRNA:   3'- agUUCUUUGCa--GCCUa--------UCUGGCa-CUG- -5'
9147 3' -48.4 NC_002512.2 + 10580 0.66 0.999956
Target:  5'- aUCGAGuccauCGUCGGAUGGuCgGUcGCa -3'
miRNA:   3'- -AGUUCuuu--GCAGCCUAUCuGgCAcUG- -5'
9147 3' -48.4 NC_002512.2 + 54261 0.66 0.999956
Target:  5'- gCAGGGcggcGGCGUCGGc--GACCcUGGCa -3'
miRNA:   3'- aGUUCU----UUGCAGCCuauCUGGcACUG- -5'
9147 3' -48.4 NC_002512.2 + 52412 0.66 0.999956
Target:  5'- cCGAGAAGCgGUCGGc-GGACC-UGAa -3'
miRNA:   3'- aGUUCUUUG-CAGCCuaUCUGGcACUg -5'
9147 3' -48.4 NC_002512.2 + 203118 0.66 0.999955
Target:  5'- cCAGG--GCGUCGGccgagucGUGGgccaucACCGUGGCg -3'
miRNA:   3'- aGUUCuuUGCAGCC-------UAUC------UGGCACUG- -5'
9147 3' -48.4 NC_002512.2 + 150304 0.66 0.999941
Target:  5'- -gAAGAGGCGgaGGAgcgAGACCGgcGGCg -3'
miRNA:   3'- agUUCUUUGCagCCUa--UCUGGCa-CUG- -5'
9147 3' -48.4 NC_002512.2 + 225990 0.66 0.99994
Target:  5'- cUCGAacguCGUCGGAUuGACCGacccaacUGACg -3'
miRNA:   3'- -AGUUcuuuGCAGCCUAuCUGGC-------ACUG- -5'
9147 3' -48.4 NC_002512.2 + 61981 0.66 0.999923
Target:  5'- gCAGGAGcACGUUGGugacGGCCuUGACg -3'
miRNA:   3'- aGUUCUU-UGCAGCCuau-CUGGcACUG- -5'
9147 3' -48.4 NC_002512.2 + 95091 0.66 0.999923
Target:  5'- gCGAGAccGGCGUCGGGcccggGGACgCGgguggGGCu -3'
miRNA:   3'- aGUUCU--UUGCAGCCUa----UCUG-GCa----CUG- -5'
9147 3' -48.4 NC_002512.2 + 95247 0.66 0.999923
Target:  5'- -gAGGggGCGUcCGGA-GGGCCGcgcGGCu -3'
miRNA:   3'- agUUCuuUGCA-GCCUaUCUGGCa--CUG- -5'
9147 3' -48.4 NC_002512.2 + 177564 0.66 0.999923
Target:  5'- -aAAGggGCGUcugauugaCGGGU-GACUGUGAg -3'
miRNA:   3'- agUUCuuUGCA--------GCCUAuCUGGCACUg -5'
9147 3' -48.4 NC_002512.2 + 47955 0.66 0.999923
Target:  5'- cCGAGGAACGaggUGGcggAGGCCGcgGACc -3'
miRNA:   3'- aGUUCUUUGCa--GCCua-UCUGGCa-CUG- -5'
9147 3' -48.4 NC_002512.2 + 101329 0.66 0.999923
Target:  5'- --cGGAGGcCGUCGaaGGUGGACaUGUGACa -3'
miRNA:   3'- aguUCUUU-GCAGC--CUAUCUG-GCACUG- -5'
9147 3' -48.4 NC_002512.2 + 98913 0.66 0.999923
Target:  5'- cCGAGuucCGUCGGAccAGACCGggGAg -3'
miRNA:   3'- aGUUCuuuGCAGCCUa-UCUGGCa-CUg -5'
9147 3' -48.4 NC_002512.2 + 121702 0.66 0.999923
Target:  5'- --uGGAAACGccucgccacCGGGgcGACCGUGAUg -3'
miRNA:   3'- aguUCUUUGCa--------GCCUauCUGGCACUG- -5'
9147 3' -48.4 NC_002512.2 + 228662 0.66 0.999923
Target:  5'- -aGAGAGGCGgggaGGAcgGGGCCGgGGCc -3'
miRNA:   3'- agUUCUUUGCag--CCUa-UCUGGCaCUG- -5'
9147 3' -48.4 NC_002512.2 + 119708 0.66 0.999923
Target:  5'- gCGAGAAGCGgcCGGcc-GGCCGUG-Cg -3'
miRNA:   3'- aGUUCUUUGCa-GCCuauCUGGCACuG- -5'
9147 3' -48.4 NC_002512.2 + 219322 0.66 0.999923
Target:  5'- aCGGGGAgaGCGUCGGcGUGGcCCGccGGCu -3'
miRNA:   3'- aGUUCUU--UGCAGCC-UAUCuGGCa-CUG- -5'
9147 3' -48.4 NC_002512.2 + 198295 0.66 0.999902
Target:  5'- uUCAGGGAGCGggccgcgcccucuaGGAUcAGGCCGUucacGGCg -3'
miRNA:   3'- -AGUUCUUUGCag------------CCUA-UCUGGCA----CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.