miRNA display CGI


Results 1 - 20 of 252 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9147 5' -65.2 NC_002512.2 + 174416 0.66 0.637179
Target:  5'- cGGCGccgGGGCCUcCGUCGG-GGCUaCCa -3'
miRNA:   3'- cUCGC---UCCGGA-GCAGCCgCCGGcGGc -5'
9147 5' -65.2 NC_002512.2 + 4656 0.66 0.637179
Target:  5'- gGAGCgGAGGCCcCGcCGGCGcGUCGaaGc -3'
miRNA:   3'- -CUCG-CUCCGGaGCaGCCGC-CGGCggC- -5'
9147 5' -65.2 NC_002512.2 + 36635 0.66 0.637179
Target:  5'- aGGGCGcgcAGGCgUagaaccgcCGUCGGCaguugacccccaGGCUGCCGg -3'
miRNA:   3'- -CUCGC---UCCGgA--------GCAGCCG------------CCGGCGGC- -5'
9147 5' -65.2 NC_002512.2 + 2305 0.66 0.637179
Target:  5'- uGGCGGGGCUcugcugCGcCGGCGGUCcggagGCCu -3'
miRNA:   3'- cUCGCUCCGGa-----GCaGCCGCCGG-----CGGc -5'
9147 5' -65.2 NC_002512.2 + 12385 0.66 0.637179
Target:  5'- cGAGCuc-GCCuUCGggcggCGGCGGCggCGCCGg -3'
miRNA:   3'- -CUCGcucCGG-AGCa----GCCGCCG--GCGGC- -5'
9147 5' -65.2 NC_002512.2 + 7224 0.66 0.637179
Target:  5'- --uCGAGGCgcccCUCGgccCGGcCGGCCGUCGc -3'
miRNA:   3'- cucGCUCCG----GAGCa--GCC-GCCGGCGGC- -5'
9147 5' -65.2 NC_002512.2 + 107256 0.66 0.637179
Target:  5'- cGAGUGGcGGUCcgCGUucaccCGGaccgaGGCCGCCGa -3'
miRNA:   3'- -CUCGCU-CCGGa-GCA-----GCCg----CCGGCGGC- -5'
9147 5' -65.2 NC_002512.2 + 100328 0.66 0.637179
Target:  5'- --cCGGcGCCUCGggacUGGCGGgCGCCGg -3'
miRNA:   3'- cucGCUcCGGAGCa---GCCGCCgGCGGC- -5'
9147 5' -65.2 NC_002512.2 + 147955 0.66 0.637179
Target:  5'- --aCGAGGCCUCGcUCGGUuucGUCGUCa -3'
miRNA:   3'- cucGCUCCGGAGC-AGCCGc--CGGCGGc -5'
9147 5' -65.2 NC_002512.2 + 119109 0.66 0.636244
Target:  5'- uGGUG-GGCgUCGUguacCGGCGGCgggaucaCGCCGa -3'
miRNA:   3'- cUCGCuCCGgAGCA----GCCGCCG-------GCGGC- -5'
9147 5' -65.2 NC_002512.2 + 136896 0.66 0.627831
Target:  5'- -cGCG-GGCCUC--UGGUGGuUCGCCGa -3'
miRNA:   3'- cuCGCuCCGGAGcaGCCGCC-GGCGGC- -5'
9147 5' -65.2 NC_002512.2 + 89031 0.66 0.627831
Target:  5'- cGAGCGAacuccacgaGGaUCUCGUCGGUGGCgaacgaggaGCUGu -3'
miRNA:   3'- -CUCGCU---------CC-GGAGCAGCCGCCGg--------CGGC- -5'
9147 5' -65.2 NC_002512.2 + 153337 0.66 0.627831
Target:  5'- -cGCuGGGCCgguccggGUCGGCGGgucCCGCUGg -3'
miRNA:   3'- cuCGcUCCGGag-----CAGCCGCC---GGCGGC- -5'
9147 5' -65.2 NC_002512.2 + 225785 0.66 0.627831
Target:  5'- --cCGAGGCUgCGcCGGCcgGGCCGCgGg -3'
miRNA:   3'- cucGCUCCGGaGCaGCCG--CCGGCGgC- -5'
9147 5' -65.2 NC_002512.2 + 227901 0.66 0.627831
Target:  5'- cGAGUccGAGGCCggaGaCGGaCGcGCCGCCu -3'
miRNA:   3'- -CUCG--CUCCGGag-CaGCC-GC-CGGCGGc -5'
9147 5' -65.2 NC_002512.2 + 4848 0.66 0.62783
Target:  5'- gGAGCGcGGCCaUCG-CGG-GGuUCGCCGc -3'
miRNA:   3'- -CUCGCuCCGG-AGCaGCCgCC-GGCGGC- -5'
9147 5' -65.2 NC_002512.2 + 103230 0.66 0.62783
Target:  5'- -cGCGucGCCgccCGUCGaCGGCCGCgGc -3'
miRNA:   3'- cuCGCucCGGa--GCAGCcGCCGGCGgC- -5'
9147 5' -65.2 NC_002512.2 + 94064 0.66 0.625961
Target:  5'- aGGGCGcGGGaCCcuccuccccccgCGaCGGCGGCgGCCGg -3'
miRNA:   3'- -CUCGC-UCC-GGa-----------GCaGCCGCCGgCGGC- -5'
9147 5' -65.2 NC_002512.2 + 118572 0.66 0.624092
Target:  5'- gGAGCGucgaaagGGaGCCgCGaUCGGCGGCCcucuccccgcggcgGCCGa -3'
miRNA:   3'- -CUCGC-------UC-CGGaGC-AGCCGCCGG--------------CGGC- -5'
9147 5' -65.2 NC_002512.2 + 124590 0.66 0.622222
Target:  5'- aGAGCGAcGcCCUgucccucgucuucggCGUCGGCGGCgucggCGCCu -3'
miRNA:   3'- -CUCGCUcC-GGA---------------GCAGCCGCCG-----GCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.