miRNA display CGI


Results 1 - 20 of 320 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9148 3' -44.3 NC_002512.2 + 28340 0.66 1
Target:  5'- -----cGCGGAGGAgcgGAAGCGGAu--- -3'
miRNA:   3'- uccuuuCGUCUCCU---UUUUGCCUuuuc -5'
9148 3' -44.3 NC_002512.2 + 108422 0.66 1
Target:  5'- gGGGAcGGCGGcGGGcgcGGGGCGGAc--- -3'
miRNA:   3'- -UCCUuUCGUCuCCU---UUUUGCCUuuuc -5'
9148 3' -44.3 NC_002512.2 + 139292 0.66 1
Target:  5'- aAGGggGGCgcccgccccGGGGGAAGGAgacCGGGGc-- -3'
miRNA:   3'- -UCCuuUCG---------UCUCCUUUUU---GCCUUuuc -5'
9148 3' -44.3 NC_002512.2 + 154797 0.66 1
Target:  5'- cGGAggGAGCgGGAGuGAGcGACGGAGGc- -3'
miRNA:   3'- uCCU--UUCG-UCUC-CUUuUUGCCUUUuc -5'
9148 3' -44.3 NC_002512.2 + 154570 0.66 1
Target:  5'- uGGGggGGC--AGGAu-AACGGcGAGGg -3'
miRNA:   3'- -UCCuuUCGucUCCUuuUUGCCuUUUC- -5'
9148 3' -44.3 NC_002512.2 + 3794 0.66 1
Target:  5'- cGGAccgGAGCAGucccGAGAgcgagccgucGACGGAAGAGu -3'
miRNA:   3'- uCCU---UUCGUCuc--CUUU----------UUGCCUUUUC- -5'
9148 3' -44.3 NC_002512.2 + 59349 0.66 1
Target:  5'- cGGAGcuGCAGcGGAu---CGGGGAAGa -3'
miRNA:   3'- uCCUUu-CGUCuCCUuuuuGCCUUUUC- -5'
9148 3' -44.3 NC_002512.2 + 98306 0.66 1
Target:  5'- aAGGAcgucuuucccgagGGGCucGGGGccGGGGACGGGGAGGg -3'
miRNA:   3'- -UCCU-------------UUCGu-CUCC--UUUUUGCCUUUUC- -5'
9148 3' -44.3 NC_002512.2 + 227423 0.66 1
Target:  5'- uGGAccGCAGAuGuGGGAACGGAAGGc -3'
miRNA:   3'- uCCUuuCGUCU-CcUUUUUGCCUUUUc -5'
9148 3' -44.3 NC_002512.2 + 45462 0.66 1
Target:  5'- cGGcGgcGGCcGAGGc--GACGGAGAAGg -3'
miRNA:   3'- -UC-CuuUCGuCUCCuuuUUGCCUUUUC- -5'
9148 3' -44.3 NC_002512.2 + 169757 0.66 1
Target:  5'- gGGGGuccguuagaauaaGAGUAGGGGAuGAGugGGGAu-- -3'
miRNA:   3'- -UCCU-------------UUCGUCUCCU-UUUugCCUUuuc -5'
9148 3' -44.3 NC_002512.2 + 133298 0.66 1
Target:  5'- cGGucccCAGAGGAccccGAGGCGGGAGGa -3'
miRNA:   3'- uCCuuucGUCUCCU----UUUUGCCUUUUc -5'
9148 3' -44.3 NC_002512.2 + 228502 0.66 1
Target:  5'- uGGGAAAcGCAGGcGGAGAccgUGGAAGGa -3'
miRNA:   3'- -UCCUUU-CGUCU-CCUUUuu-GCCUUUUc -5'
9148 3' -44.3 NC_002512.2 + 19895 0.66 1
Target:  5'- aGGcGGucGCGGAGGAAcccCGGGAAGc -3'
miRNA:   3'- -UC-CUuuCGUCUCCUUuuuGCCUUUUc -5'
9148 3' -44.3 NC_002512.2 + 81908 0.66 1
Target:  5'- cGGAGGucgugcgccGUGGAGGggGAcgacgacggcgaggGCGGAGGGGc -3'
miRNA:   3'- uCCUUU---------CGUCUCCuuUU--------------UGCCUUUUC- -5'
9148 3' -44.3 NC_002512.2 + 120591 0.66 1
Target:  5'- cGGGAGAGgAaGGGAGAGAgCGGGc--- -3'
miRNA:   3'- -UCCUUUCgUcUCCUUUUU-GCCUuuuc -5'
9148 3' -44.3 NC_002512.2 + 64294 0.66 1
Target:  5'- uAGGGAGGcCAGuuGggGAGCGGc---- -3'
miRNA:   3'- -UCCUUUC-GUCucCuuUUUGCCuuuuc -5'
9148 3' -44.3 NC_002512.2 + 24535 0.66 1
Target:  5'- cGGucagcGAGCGG-GGAcgGAgGGGAGAGa -3'
miRNA:   3'- uCCu----UUCGUCuCCUuuUUgCCUUUUC- -5'
9148 3' -44.3 NC_002512.2 + 226830 0.66 1
Target:  5'- uGGGGAGCGGAagccauuagccGGGuggcgaacGAGCGGAAAGa -3'
miRNA:   3'- uCCUUUCGUCU-----------CCUu-------UUUGCCUUUUc -5'
9148 3' -44.3 NC_002512.2 + 47957 0.66 1
Target:  5'- gAGGAAcgagguGGCGGAGGcc--GCGGAc--- -3'
miRNA:   3'- -UCCUU------UCGUCUCCuuuuUGCCUuuuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.