miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9149 3' -56.9 NC_002512.2 + 157368 0.66 0.947976
Target:  5'- -gGUCCGGGCCGCcGGGcaGGGacCGg-- -3'
miRNA:   3'- ggCAGGCCUGGCG-CCU--UCCaaGCagu -5'
9149 3' -56.9 NC_002512.2 + 127822 0.66 0.947976
Target:  5'- -gGUCCcGGCUcCGGGAGG-UCGUCGg -3'
miRNA:   3'- ggCAGGcCUGGcGCCUUCCaAGCAGU- -5'
9149 3' -56.9 NC_002512.2 + 95731 0.66 0.943818
Target:  5'- -gGUCCGGGUCGaCGGGuacccguccGGGUugaUCGUCAg -3'
miRNA:   3'- ggCAGGCCUGGC-GCCU---------UCCA---AGCAGU- -5'
9149 3' -56.9 NC_002512.2 + 99398 0.67 0.939448
Target:  5'- -gGUCCGGACuCcCGGGGcGGcUUCGUCu -3'
miRNA:   3'- ggCAGGCCUG-GcGCCUU-CC-AAGCAGu -5'
9149 3' -56.9 NC_002512.2 + 97503 0.67 0.939448
Target:  5'- uUCGUCCacgacuuCCGCgGGGAGG-UCGUCGa -3'
miRNA:   3'- -GGCAGGccu----GGCG-CCUUCCaAGCAGU- -5'
9149 3' -56.9 NC_002512.2 + 29164 0.67 0.939448
Target:  5'- cCCGUUCGGACCGcCGGgcGGcagcccgaCGcCAc -3'
miRNA:   3'- -GGCAGGCCUGGC-GCCuuCCaa------GCaGU- -5'
9149 3' -56.9 NC_002512.2 + 218450 0.67 0.938999
Target:  5'- cCCGUCCGcGGcguccCCGCGGAccgcGGUcaucuccUCGUCc -3'
miRNA:   3'- -GGCAGGC-CU-----GGCGCCUu---CCA-------AGCAGu -5'
9149 3' -56.9 NC_002512.2 + 13571 0.67 0.934865
Target:  5'- gCGUCgGGGCCGCaGAugcAGGUgacccaCGUCc -3'
miRNA:   3'- gGCAGgCCUGGCGcCU---UCCAa-----GCAGu -5'
9149 3' -56.9 NC_002512.2 + 182784 0.67 0.934865
Target:  5'- gCGUCCGGAgcguCUGCGc---GUUCGUCAg -3'
miRNA:   3'- gGCAGGCCU----GGCGCcuucCAAGCAGU- -5'
9149 3' -56.9 NC_002512.2 + 135973 0.67 0.934865
Target:  5'- cCCGUCUGGGagggCGCGG--GGUUCGg-- -3'
miRNA:   3'- -GGCAGGCCUg---GCGCCuuCCAAGCagu -5'
9149 3' -56.9 NC_002512.2 + 105917 0.67 0.934395
Target:  5'- gCGUCCGGuggguccUCGgGGAGGcggacucGUUCGUCAc -3'
miRNA:   3'- gGCAGGCCu------GGCgCCUUC-------CAAGCAGU- -5'
9149 3' -56.9 NC_002512.2 + 226420 0.67 0.930069
Target:  5'- uCCGcgucUCCGGA-CGCGGGAccUUCGUCGc -3'
miRNA:   3'- -GGC----AGGCCUgGCGCCUUccAAGCAGU- -5'
9149 3' -56.9 NC_002512.2 + 9689 0.67 0.930069
Target:  5'- gCCGU-CGGGCCccgGCGG-GGGUUCG-CGg -3'
miRNA:   3'- -GGCAgGCCUGG---CGCCuUCCAAGCaGU- -5'
9149 3' -56.9 NC_002512.2 + 71271 0.67 0.925058
Target:  5'- gCCGUCCaGGGCCGCcaGGAcccGGGagCG-CAc -3'
miRNA:   3'- -GGCAGG-CCUGGCG--CCU---UCCaaGCaGU- -5'
9149 3' -56.9 NC_002512.2 + 119563 0.67 0.919832
Target:  5'- aCCGggCGGACCGCGGGAGcccggCGg-- -3'
miRNA:   3'- -GGCagGCCUGGCGCCUUCcaa--GCagu -5'
9149 3' -56.9 NC_002512.2 + 24839 0.67 0.919832
Target:  5'- -gGUCCGGGcCCGCGGccGG-UCGgCGg -3'
miRNA:   3'- ggCAGGCCU-GGCGCCuuCCaAGCaGU- -5'
9149 3' -56.9 NC_002512.2 + 45311 0.67 0.919832
Target:  5'- gCCGcccugCCGGcCCGCGGGucggAGGgcCGUCc -3'
miRNA:   3'- -GGCa----GGCCuGGCGCCU----UCCaaGCAGu -5'
9149 3' -56.9 NC_002512.2 + 97201 0.67 0.919832
Target:  5'- cCCGUCUGcGGCgGCGGGccGGGcgggaCGUCGa -3'
miRNA:   3'- -GGCAGGC-CUGgCGCCU--UCCaa---GCAGU- -5'
9149 3' -56.9 NC_002512.2 + 134765 0.67 0.919832
Target:  5'- aCCGUCCGGuuCGuCGGcGGGcccgcCGUCGc -3'
miRNA:   3'- -GGCAGGCCugGC-GCCuUCCaa---GCAGU- -5'
9149 3' -56.9 NC_002512.2 + 103555 0.67 0.919832
Target:  5'- cCCGUcCCGGA-CGCGGcGGccUCGUCGu -3'
miRNA:   3'- -GGCA-GGCCUgGCGCCuUCcaAGCAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.