miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9149 5' -53.1 NC_002512.2 + 18183 0.66 0.989804
Target:  5'- cCGUAGGCGcgcuCCUcgugCCGCAUC--ACGUCg -3'
miRNA:   3'- -GCGUUCGCu---GGA----GGUGUAGcuUGCAG- -5'
9149 5' -53.1 NC_002512.2 + 22122 0.66 0.988453
Target:  5'- cCGCAaccaccacGGCGGCggCUCCACcccgGAGCGUCc -3'
miRNA:   3'- -GCGU--------UCGCUG--GAGGUGuag-CUUGCAG- -5'
9149 5' -53.1 NC_002512.2 + 83023 0.66 0.993129
Target:  5'- gCGguAGUGGCC-CCGCG-CGAGC-UCg -3'
miRNA:   3'- -GCguUCGCUGGaGGUGUaGCUUGcAG- -5'
9149 5' -53.1 NC_002512.2 + 137807 0.66 0.991029
Target:  5'- gCGCGuccGGCGGCCgUCCGucUCGuAGCGUUc -3'
miRNA:   3'- -GCGU---UCGCUGG-AGGUguAGC-UUGCAG- -5'
9149 5' -53.1 NC_002512.2 + 88425 0.66 0.989804
Target:  5'- uCGCGA-CGG-CUCCGCGauaaCGGACGUCg -3'
miRNA:   3'- -GCGUUcGCUgGAGGUGUa---GCUUGCAG- -5'
9149 5' -53.1 NC_002512.2 + 17494 0.66 0.992134
Target:  5'- uCGUcGGCcGCCUCCucgaucucgACGUCG-GCGUCg -3'
miRNA:   3'- -GCGuUCGcUGGAGG---------UGUAGCuUGCAG- -5'
9149 5' -53.1 NC_002512.2 + 155550 0.66 0.992134
Target:  5'- uCGUggGCG-CC-CUACGUCGGACu-- -3'
miRNA:   3'- -GCGuuCGCuGGaGGUGUAGCUUGcag -5'
9149 5' -53.1 NC_002512.2 + 98013 0.66 0.992134
Target:  5'- uGCuGGUGGCCgUCCugAUCcgccgcGGCGUCa -3'
miRNA:   3'- gCGuUCGCUGG-AGGugUAGc-----UUGCAG- -5'
9149 5' -53.1 NC_002512.2 + 2098 0.66 0.991029
Target:  5'- aGCGGGCGguACggCCGCGgcucggucgCGGGCGUCg -3'
miRNA:   3'- gCGUUCGC--UGgaGGUGUa--------GCUUGCAG- -5'
9149 5' -53.1 NC_002512.2 + 62460 0.66 0.988453
Target:  5'- gCGCAGGCGugCcgCCGCA-CGAGa-UCg -3'
miRNA:   3'- -GCGUUCGCugGa-GGUGUaGCUUgcAG- -5'
9149 5' -53.1 NC_002512.2 + 136891 0.66 0.991029
Target:  5'- cCGCcaccGAGaCGGCCaCCAgGUCGGgcgACGUCa -3'
miRNA:   3'- -GCG----UUC-GCUGGaGGUgUAGCU---UGCAG- -5'
9149 5' -53.1 NC_002512.2 + 130335 0.66 0.988453
Target:  5'- aGCGGuucacGCG-CCUCCugcgcuGCAUCGAGCGg- -3'
miRNA:   3'- gCGUU-----CGCuGGAGG------UGUAGCUUGCag -5'
9149 5' -53.1 NC_002512.2 + 110766 0.66 0.988453
Target:  5'- cCGguAGCGcACCUCCGCAgcu-GCGcCg -3'
miRNA:   3'- -GCguUCGC-UGGAGGUGUagcuUGCaG- -5'
9149 5' -53.1 NC_002512.2 + 29790 0.66 0.992134
Target:  5'- aGUAccccGGCGACC-CCGCGaCGGGCG-Cg -3'
miRNA:   3'- gCGU----UCGCUGGaGGUGUaGCUUGCaG- -5'
9149 5' -53.1 NC_002512.2 + 48873 0.66 0.993129
Target:  5'- aCGCGGGCcucCCUCUACA-CGAACa-- -3'
miRNA:   3'- -GCGUUCGcu-GGAGGUGUaGCUUGcag -5'
9149 5' -53.1 NC_002512.2 + 59261 0.66 0.989804
Target:  5'- gCGgAAGCGAUgUcgcCCACGUCcguGACGUCg -3'
miRNA:   3'- -GCgUUCGCUGgA---GGUGUAGc--UUGCAG- -5'
9149 5' -53.1 NC_002512.2 + 8204 0.66 0.992545
Target:  5'- nCGcCGGGCGGgUgUCCGCGucccagacguaggccUCGAGCGUCg -3'
miRNA:   3'- -GC-GUUCGCUgG-AGGUGU---------------AGCUUGCAG- -5'
9149 5' -53.1 NC_002512.2 + 85407 0.66 0.992134
Target:  5'- uGCAGGaCGAaCUCCACgcgGUUGGACGcCu -3'
miRNA:   3'- gCGUUC-GCUgGAGGUG---UAGCUUGCaG- -5'
9149 5' -53.1 NC_002512.2 + 52876 0.66 0.992134
Target:  5'- gCGCAGGCGGCCcugacgCCACGaaguacaUGGACGcCu -3'
miRNA:   3'- -GCGUUCGCUGGa-----GGUGUa------GCUUGCaG- -5'
9149 5' -53.1 NC_002512.2 + 17608 0.66 0.988453
Target:  5'- uCGCGGaUGACCUCCACcuccUCGAAaCGcUCg -3'
miRNA:   3'- -GCGUUcGCUGGAGGUGu---AGCUU-GC-AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.