miRNA display CGI


Results 21 - 40 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9150 3' -53.8 NC_002512.2 + 74553 0.66 0.99081
Target:  5'- gGCCgcgGCgaCGGGAGCGAggUUgGCGaGAUCGu -3'
miRNA:   3'- -CGGa--UG--GCCUUUGCU--AGgCGC-CUAGC- -5'
9150 3' -53.8 NC_002512.2 + 24902 0.66 0.99081
Target:  5'- cGCCUuCCGGucccCGucgcCCGCGGcGUCGg -3'
miRNA:   3'- -CGGAuGGCCuuu-GCua--GGCGCC-UAGC- -5'
9150 3' -53.8 NC_002512.2 + 8928 0.66 0.99081
Target:  5'- gGCCUcgGCCGGGucGGCGAugaagagcgcguUCCGaCGGuagCGg -3'
miRNA:   3'- -CGGA--UGGCCU--UUGCU------------AGGC-GCCua-GC- -5'
9150 3' -53.8 NC_002512.2 + 88166 0.66 0.99081
Target:  5'- cGUCgcCCGG-GACGGUCgCGUccgGGAUCGa -3'
miRNA:   3'- -CGGauGGCCuUUGCUAG-GCG---CCUAGC- -5'
9150 3' -53.8 NC_002512.2 + 114585 0.66 0.990335
Target:  5'- cGCCUGuacuaCGGGGACGAUCCGgaaCGGuacaaccugagcuUCGa -3'
miRNA:   3'- -CGGAUg----GCCUUUGCUAGGC---GCCu------------AGC- -5'
9150 3' -53.8 NC_002512.2 + 32564 0.66 0.989586
Target:  5'- aGCC-GCCGGGcgccGCGGgugCCG-GGGUCGu -3'
miRNA:   3'- -CGGaUGGCCUu---UGCUa--GGCgCCUAGC- -5'
9150 3' -53.8 NC_002512.2 + 185544 0.66 0.989586
Target:  5'- gGCCUACCGGcc-----CCGCGGcgUGg -3'
miRNA:   3'- -CGGAUGGCCuuugcuaGGCGCCuaGC- -5'
9150 3' -53.8 NC_002512.2 + 219211 0.66 0.989586
Target:  5'- uGCaCUGCCGGGccggccucGGCGAggUCG-GGAUCGu -3'
miRNA:   3'- -CG-GAUGGCCU--------UUGCUa-GGCgCCUAGC- -5'
9150 3' -53.8 NC_002512.2 + 145260 0.66 0.989586
Target:  5'- cGCCgcCUGGAcGACGAccugCUGCGGAUg- -3'
miRNA:   3'- -CGGauGGCCU-UUGCUa---GGCGCCUAgc -5'
9150 3' -53.8 NC_002512.2 + 153250 0.66 0.989586
Target:  5'- aGCgaGCCgGGAGACGAUC-GaCGGAUgCGa -3'
miRNA:   3'- -CGgaUGG-CCUUUGCUAGgC-GCCUA-GC- -5'
9150 3' -53.8 NC_002512.2 + 121827 0.66 0.989457
Target:  5'- cGCCgucgGCCGGAcgggggggaggacGGCGGggaggacggCgGCGGAUCc -3'
miRNA:   3'- -CGGa---UGGCCU-------------UUGCUa--------GgCGCCUAGc -5'
9150 3' -53.8 NC_002512.2 + 135001 0.66 0.989457
Target:  5'- cGCCUACCcguucguccuggaGGAuuCGggCCGgCGGA-CGg -3'
miRNA:   3'- -CGGAUGG-------------CCUuuGCuaGGC-GCCUaGC- -5'
9150 3' -53.8 NC_002512.2 + 225813 0.66 0.988238
Target:  5'- gGCCgggugGCCuGGGAccuCGAgCCGCGGGggaUCGa -3'
miRNA:   3'- -CGGa----UGG-CCUUu--GCUaGGCGCCU---AGC- -5'
9150 3' -53.8 NC_002512.2 + 201824 0.66 0.988238
Target:  5'- cGCCgcgcCCGGggGCuccuUCCGCGGc-CGg -3'
miRNA:   3'- -CGGau--GGCCuuUGcu--AGGCGCCuaGC- -5'
9150 3' -53.8 NC_002512.2 + 217776 0.66 0.988238
Target:  5'- cCCgucGCCGGGGucGCGG-CCggcugGCGGAUCGg -3'
miRNA:   3'- cGGa--UGGCCUU--UGCUaGG-----CGCCUAGC- -5'
9150 3' -53.8 NC_002512.2 + 199609 0.66 0.988238
Target:  5'- gGCCUccuccauggcGCCGGcuccGCGcGUCCGCGGGg-- -3'
miRNA:   3'- -CGGA----------UGGCCuu--UGC-UAGGCGCCUagc -5'
9150 3' -53.8 NC_002512.2 + 124952 0.66 0.988238
Target:  5'- cGCCgacGCCGGAcGAgGAggccgUCGCGGAcuUCGc -3'
miRNA:   3'- -CGGa--UGGCCU-UUgCUa----GGCGCCU--AGC- -5'
9150 3' -53.8 NC_002512.2 + 87895 0.66 0.988238
Target:  5'- aGCa-ACCGGucguuGAcCGAUCUGCGGAcCGa -3'
miRNA:   3'- -CGgaUGGCCu----UU-GCUAGGCGCCUaGC- -5'
9150 3' -53.8 NC_002512.2 + 7447 0.66 0.988238
Target:  5'- gGCCgcggcCCGGggGaag-CCGCGGcgCGg -3'
miRNA:   3'- -CGGau---GGCCuuUgcuaGGCGCCuaGC- -5'
9150 3' -53.8 NC_002512.2 + 75148 0.66 0.988238
Target:  5'- cGCCgu-CGGAcGCGG-CCGCGGA-CGc -3'
miRNA:   3'- -CGGaugGCCUuUGCUaGGCGCCUaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.