miRNA display CGI


Results 1 - 20 of 86 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9151 3' -58.2 NC_002512.2 + 77824 1.04 0.007059
Target:  5'- cGAGUACGUGCUCGACGCCGG-GCGGCa -3'
miRNA:   3'- -CUCAUGCACGAGCUGCGGCCaCGCCG- -5'
9151 3' -58.2 NC_002512.2 + 40224 0.78 0.295056
Target:  5'- cAGUAgG-GC-CGACGCCGGUGuCGGCg -3'
miRNA:   3'- cUCAUgCaCGaGCUGCGGCCAC-GCCG- -5'
9151 3' -58.2 NC_002512.2 + 29019 0.76 0.381632
Target:  5'- uGGGcgGCGUGgUCGACGCCa-UGCGGCa -3'
miRNA:   3'- -CUCa-UGCACgAGCUGCGGccACGCCG- -5'
9151 3' -58.2 NC_002512.2 + 101851 0.76 0.38957
Target:  5'- cGGGgcCGUGCagcucuUCGACGCCGGgGCGGg -3'
miRNA:   3'- -CUCauGCACG------AGCUGCGGCCaCGCCg -5'
9151 3' -58.2 NC_002512.2 + 45411 0.75 0.430839
Target:  5'- -cGUGCGggcGCUCGacggcgGCGCCGGccGCGGCg -3'
miRNA:   3'- cuCAUGCa--CGAGC------UGCGGCCa-CGCCG- -5'
9151 3' -58.2 NC_002512.2 + 29156 0.73 0.529769
Target:  5'- cGGUACGacccGUUCGGacCGCCGG-GCGGCa -3'
miRNA:   3'- cUCAUGCa---CGAGCU--GCGGCCaCGCCG- -5'
9151 3' -58.2 NC_002512.2 + 55659 0.72 0.58716
Target:  5'- aGAGgACGa-CUCGACGCCGG-GCGGg -3'
miRNA:   3'- -CUCaUGCacGAGCUGCGGCCaCGCCg -5'
9151 3' -58.2 NC_002512.2 + 29932 0.72 0.58716
Target:  5'- gGAGUGCauaacaucaUGCUgGACaGCCGGUgaGCGGCg -3'
miRNA:   3'- -CUCAUGc--------ACGAgCUG-CGGCCA--CGCCG- -5'
9151 3' -58.2 NC_002512.2 + 8837 0.72 0.606586
Target:  5'- uGGGccagACGgGCUCGcUGCCGG-GCGGCa -3'
miRNA:   3'- -CUCa---UGCaCGAGCuGCGGCCaCGCCG- -5'
9151 3' -58.2 NC_002512.2 + 116806 0.72 0.616329
Target:  5'- cAGUACGUGCgcaucgUCGAcCGCCuggcccucGUGCGGCu -3'
miRNA:   3'- cUCAUGCACG------AGCU-GCGGc-------CACGCCG- -5'
9151 3' -58.2 NC_002512.2 + 98263 0.71 0.635839
Target:  5'- cGAGaGCGUcUUCGugGCCGG-GCGGg -3'
miRNA:   3'- -CUCaUGCAcGAGCugCGGCCaCGCCg -5'
9151 3' -58.2 NC_002512.2 + 75186 0.71 0.665067
Target:  5'- ---cGCGccGCUCGACGCCGGa-CGGCc -3'
miRNA:   3'- cucaUGCa-CGAGCUGCGGCCacGCCG- -5'
9151 3' -58.2 NC_002512.2 + 118077 0.71 0.674771
Target:  5'- gGAGgggGCG-GCUcCGGCGCCG--GCGGCg -3'
miRNA:   3'- -CUCa--UGCaCGA-GCUGCGGCcaCGCCG- -5'
9151 3' -58.2 NC_002512.2 + 155366 0.71 0.674771
Target:  5'- ---aGCGgcGCUCGAgGUCGGgGCGGCg -3'
miRNA:   3'- cucaUGCa-CGAGCUgCGGCCaCGCCG- -5'
9151 3' -58.2 NC_002512.2 + 98005 0.71 0.680579
Target:  5'- cGAGcACGUGCUgGugGCCGuccugauccgccGCGGCg -3'
miRNA:   3'- -CUCaUGCACGAgCugCGGCca----------CGCCG- -5'
9151 3' -58.2 NC_002512.2 + 153970 0.71 0.684443
Target:  5'- gGGGUcCGg---CGGCGCCGGcgGCGGCa -3'
miRNA:   3'- -CUCAuGCacgaGCUGCGGCCa-CGCCG- -5'
9151 3' -58.2 NC_002512.2 + 112302 0.71 0.684443
Target:  5'- cAGaGC-UGCUCGAUGCCGGUGacguaGGUc -3'
miRNA:   3'- cUCaUGcACGAGCUGCGGCCACg----CCG- -5'
9151 3' -58.2 NC_002512.2 + 19871 0.7 0.703663
Target:  5'- cGGUACG-GCUgGACGuuGGUccGCaGGCg -3'
miRNA:   3'- cUCAUGCaCGAgCUGCggCCA--CG-CCG- -5'
9151 3' -58.2 NC_002512.2 + 13737 0.7 0.703663
Target:  5'- uGAGgg---GCgCGACGCCGGUGUGaGCg -3'
miRNA:   3'- -CUCaugcaCGaGCUGCGGCCACGC-CG- -5'
9151 3' -58.2 NC_002512.2 + 11011 0.7 0.703663
Target:  5'- uGAGgGCGcGCaCGGCGUCGGUGCcccgGGCg -3'
miRNA:   3'- -CUCaUGCaCGaGCUGCGGCCACG----CCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.