miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9151 5' -54.1 NC_002512.2 + 37934 0.75 0.650442
Target:  5'- -uGCCCUCCGGggcGAgGAGCAUGUAGg -3'
miRNA:   3'- ucUGGGAGGCCa--CUgCUCGUGUAUUa -5'
9151 5' -54.1 NC_002512.2 + 106708 0.67 0.965304
Target:  5'- gGGGCUCUCCGG-GAUGAccGCGCu---- -3'
miRNA:   3'- -UCUGGGAGGCCaCUGCU--CGUGuauua -5'
9151 5' -54.1 NC_002512.2 + 10345 0.67 0.965304
Target:  5'- aAGACCCgUCCGGUG---GGCACGc--- -3'
miRNA:   3'- -UCUGGG-AGGCCACugcUCGUGUauua -5'
9151 5' -54.1 NC_002512.2 + 95948 0.67 0.968427
Target:  5'- -cGCCCUCCGGcGGgGGGCugAg--- -3'
miRNA:   3'- ucUGGGAGGCCaCUgCUCGugUauua -5'
9151 5' -54.1 NC_002512.2 + 134762 0.66 0.974064
Target:  5'- cGGACCgUCCGGUucgucGGCGGGCcCGc--- -3'
miRNA:   3'- -UCUGGgAGGCCA-----CUGCUCGuGUauua -5'
9151 5' -54.1 NC_002512.2 + 32608 0.66 0.974064
Target:  5'- gAGGCuCUUCUGGcUGACGAuGCGgGUGAa -3'
miRNA:   3'- -UCUG-GGAGGCC-ACUGCU-CGUgUAUUa -5'
9151 5' -54.1 NC_002512.2 + 43461 0.66 0.978932
Target:  5'- gAGGCCCagCCGGc--CGAGCACGg--- -3'
miRNA:   3'- -UCUGGGa-GGCCacuGCUCGUGUauua -5'
9151 5' -54.1 NC_002512.2 + 83636 0.66 0.981095
Target:  5'- cGGCCCaccaggucCCGGUcgaGGCaGAGCGCGUGGUc -3'
miRNA:   3'- uCUGGGa-------GGCCA---CUG-CUCGUGUAUUA- -5'
9151 5' -54.1 NC_002512.2 + 194094 0.66 0.981095
Target:  5'- cGAUCCUCCaagaauGGUGACGAuccgggucCACGUGAa -3'
miRNA:   3'- uCUGGGAGG------CCACUGCUc-------GUGUAUUa -5'
9151 5' -54.1 NC_002512.2 + 80571 0.67 0.95842
Target:  5'- --uCCCUCCGGcGGCGAGCccGCGc--- -3'
miRNA:   3'- ucuGGGAGGCCaCUGCUCG--UGUauua -5'
9151 5' -54.1 NC_002512.2 + 39742 0.67 0.95842
Target:  5'- aAGACCCacCCGGUGggccagGCGAGCAgCAc--- -3'
miRNA:   3'- -UCUGGGa-GGCCAC------UGCUCGU-GUauua -5'
9151 5' -54.1 NC_002512.2 + 123771 0.67 0.954649
Target:  5'- cGGGCUCUCCcGUGACGucuGGCuCGUGAa -3'
miRNA:   3'- -UCUGGGAGGcCACUGC---UCGuGUAUUa -5'
9151 5' -54.1 NC_002512.2 + 203396 0.73 0.73061
Target:  5'- cAGGCCCUUCaaUGACGAGCACGa--- -3'
miRNA:   3'- -UCUGGGAGGccACUGCUCGUGUauua -5'
9151 5' -54.1 NC_002512.2 + 130258 0.72 0.776411
Target:  5'- cGGGCCCUCCGaGggcgacgaccgcGACGAGCGCGg--- -3'
miRNA:   3'- -UCUGGGAGGC-Ca-----------CUGCUCGUGUauua -5'
9151 5' -54.1 NC_002512.2 + 125860 0.71 0.83931
Target:  5'- cGGuacuCCCUCUGGUccGGCGGGCACGg--- -3'
miRNA:   3'- -UCu---GGGAGGCCA--CUGCUCGUGUauua -5'
9151 5' -54.1 NC_002512.2 + 57848 0.7 0.862834
Target:  5'- uGACCCggCGG-GugGGGCGCAUGc- -3'
miRNA:   3'- uCUGGGagGCCaCugCUCGUGUAUua -5'
9151 5' -54.1 NC_002512.2 + 122913 0.69 0.904195
Target:  5'- cGGCCUUCuaCGGgGACGAGCGCGa--- -3'
miRNA:   3'- uCUGGGAG--GCCaCUGCUCGUGUauua -5'
9151 5' -54.1 NC_002512.2 + 127643 0.69 0.904195
Target:  5'- cGGACCCgggcCCGGgucgGACaGAGCGCcgAGg -3'
miRNA:   3'- -UCUGGGa---GGCCa---CUG-CUCGUGuaUUa -5'
9151 5' -54.1 NC_002512.2 + 130666 0.69 0.921801
Target:  5'- gGGGCUCUCCGaGgaccggGACGGGCugcuCGUGGUg -3'
miRNA:   3'- -UCUGGGAGGC-Ca-----CUGCUCGu---GUAUUA- -5'
9151 5' -54.1 NC_002512.2 + 94907 0.68 0.950653
Target:  5'- -aGCUCU-CGG-GGCGAGCACAUGGa -3'
miRNA:   3'- ucUGGGAgGCCaCUGCUCGUGUAUUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.