miRNA display CGI


Results 1 - 20 of 302 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9152 3' -55.6 NC_002512.2 + 137918 0.66 0.970325
Target:  5'- cGGCCcuCCGGAcgugccGCUCCGcccuggCGAuCGCGCc -3'
miRNA:   3'- uUCGG--GGCUU------UGAGGCa-----GCUuGCGCG- -5'
9152 3' -55.6 NC_002512.2 + 118085 0.66 0.970325
Target:  5'- cGGCUCCG--GCgCCGgcggCGAcCGCGCg -3'
miRNA:   3'- uUCGGGGCuuUGaGGCa---GCUuGCGCG- -5'
9152 3' -55.6 NC_002512.2 + 107792 0.66 0.970325
Target:  5'- cAGCgCCGAc-CUCgCGUCcGGCGCGUg -3'
miRNA:   3'- uUCGgGGCUuuGAG-GCAGcUUGCGCG- -5'
9152 3' -55.6 NC_002512.2 + 99427 0.66 0.970325
Target:  5'- -cGCCCCc--GCUCCuGUCGGACGaCa- -3'
miRNA:   3'- uuCGGGGcuuUGAGG-CAGCUUGC-Gcg -5'
9152 3' -55.6 NC_002512.2 + 81082 0.66 0.970325
Target:  5'- cGAGCUCCGAGACggugCCGcagCGGuACGaguCGCu -3'
miRNA:   3'- -UUCGGGGCUUUGa---GGCa--GCU-UGC---GCG- -5'
9152 3' -55.6 NC_002512.2 + 126646 0.66 0.970325
Target:  5'- -uGCCCuCGccGCggCCGUCG-ACGgGCg -3'
miRNA:   3'- uuCGGG-GCuuUGa-GGCAGCuUGCgCG- -5'
9152 3' -55.6 NC_002512.2 + 101623 0.66 0.970325
Target:  5'- cGGCgCCGGGACgcgagucgCCGcUCGAGgggaGCGCg -3'
miRNA:   3'- uUCGgGGCUUUGa-------GGC-AGCUUg---CGCG- -5'
9152 3' -55.6 NC_002512.2 + 99108 0.66 0.970325
Target:  5'- cGAGCCCgGGccGCUCCaagaGAuCGCGCa -3'
miRNA:   3'- -UUCGGGgCUu-UGAGGcag-CUuGCGCG- -5'
9152 3' -55.6 NC_002512.2 + 178976 0.66 0.970325
Target:  5'- -cGgCCCGGAAgUCCGacUCGGACGUc- -3'
miRNA:   3'- uuCgGGGCUUUgAGGC--AGCUUGCGcg -5'
9152 3' -55.6 NC_002512.2 + 76172 0.66 0.970325
Target:  5'- -cGCCgUGAGAC-CCGaccaGGACGUGCu -3'
miRNA:   3'- uuCGGgGCUUUGaGGCag--CUUGCGCG- -5'
9152 3' -55.6 NC_002512.2 + 75486 0.66 0.970325
Target:  5'- cGGaCCCCGAucgcCUCCGaCGGGgGCGg -3'
miRNA:   3'- uUC-GGGGCUuu--GAGGCaGCUUgCGCg -5'
9152 3' -55.6 NC_002512.2 + 159057 0.66 0.970325
Target:  5'- -cGUCCCGggGCga-GgCGGACGaCGCg -3'
miRNA:   3'- uuCGGGGCuuUGaggCaGCUUGC-GCG- -5'
9152 3' -55.6 NC_002512.2 + 2548 0.66 0.970325
Target:  5'- -cGUCCCGucuCUCCGuccccuuccUCGGGCGCcgGCg -3'
miRNA:   3'- uuCGGGGCuuuGAGGC---------AGCUUGCG--CG- -5'
9152 3' -55.6 NC_002512.2 + 95656 0.66 0.970325
Target:  5'- -cGCCCcCGGcacAGcCUCuCGU-GAGCGCGCg -3'
miRNA:   3'- uuCGGG-GCU---UU-GAG-GCAgCUUGCGCG- -5'
9152 3' -55.6 NC_002512.2 + 98229 0.66 0.967398
Target:  5'- cGGCCCUccuGCUCCuGUgGAAgGUGCu -3'
miRNA:   3'- uUCGGGGcuuUGAGG-CAgCUUgCGCG- -5'
9152 3' -55.6 NC_002512.2 + 132545 0.66 0.967398
Target:  5'- cAGCUUCGGgugcAGCUUCGacagggCGAACGCGUu -3'
miRNA:   3'- uUCGGGGCU----UUGAGGCa-----GCUUGCGCG- -5'
9152 3' -55.6 NC_002512.2 + 74921 0.66 0.967398
Target:  5'- gAGGCCCgGAGGCggaUCG-CGGAC-CGCg -3'
miRNA:   3'- -UUCGGGgCUUUGa--GGCaGCUUGcGCG- -5'
9152 3' -55.6 NC_002512.2 + 12172 0.66 0.967398
Target:  5'- -cGCCCCuGAAGCggaccUCGUCG-ACGCcgGCg -3'
miRNA:   3'- uuCGGGG-CUUUGa----GGCAGCuUGCG--CG- -5'
9152 3' -55.6 NC_002512.2 + 55404 0.66 0.967398
Target:  5'- -cGCCCCGccGAGCgugCCGcUGGugGUGUa -3'
miRNA:   3'- uuCGGGGC--UUUGa--GGCaGCUugCGCG- -5'
9152 3' -55.6 NC_002512.2 + 114678 0.66 0.967398
Target:  5'- cGGUCaCCGAG--UCCGUC-AGCGCGUc -3'
miRNA:   3'- uUCGG-GGCUUugAGGCAGcUUGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.