miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9152 5' -49.2 NC_002512.2 + 198243 0.66 0.999869
Target:  5'- -cGCGCCGUccgggacggccUCCAUGUaGUgccggagcugcUCGAGGc -3'
miRNA:   3'- uuUGCGGCA-----------AGGUGCAaCAa----------AGCUCC- -5'
9152 5' -49.2 NC_002512.2 + 149468 0.66 0.999869
Target:  5'- gGGACGCCGccgacagCCACGccaccaUCGGGGg -3'
miRNA:   3'- -UUUGCGGCaa-----GGUGCaacaa-AGCUCC- -5'
9152 5' -49.2 NC_002512.2 + 196642 0.66 0.999869
Target:  5'- cGACGCCGUgugUCUggggggccgguACGUgugcUGUUgCGAGGa -3'
miRNA:   3'- uUUGCGGCA---AGG-----------UGCA----ACAAaGCUCC- -5'
9152 5' -49.2 NC_002512.2 + 102496 0.66 0.999865
Target:  5'- cGGCGUCGUUCCcgccgcgggagucGCGgccg-UCGGGGg -3'
miRNA:   3'- uUUGCGGCAAGG-------------UGCaacaaAGCUCC- -5'
9152 5' -49.2 NC_002512.2 + 109015 0.66 0.999832
Target:  5'- cGGCGUCGUccugcggacCCGCGgcGcgUUCGAGGg -3'
miRNA:   3'- uUUGCGGCAa--------GGUGCaaCa-AAGCUCC- -5'
9152 5' -49.2 NC_002512.2 + 104968 0.66 0.999832
Target:  5'- cGACGCCGggUCCGCc-----UCGAGGu -3'
miRNA:   3'- uUUGCGGCa-AGGUGcaacaaAGCUCC- -5'
9152 5' -49.2 NC_002512.2 + 78981 0.66 0.999786
Target:  5'- uAGCGUCG-UCCGCGgccgagagaggUGUggcUUCGGGGu -3'
miRNA:   3'- uUUGCGGCaAGGUGCa----------ACA---AAGCUCC- -5'
9152 5' -49.2 NC_002512.2 + 85676 0.66 0.999786
Target:  5'- --uCGCCcugcGUUCCGCGgaugacgUCGAGGu -3'
miRNA:   3'- uuuGCGG----CAAGGUGCaacaa--AGCUCC- -5'
9152 5' -49.2 NC_002512.2 + 219290 0.66 0.99977
Target:  5'- cGACGCCGUggcccgcuucgucgUCCGCGgcca--CGGGGa -3'
miRNA:   3'- uUUGCGGCA--------------AGGUGCaacaaaGCUCC- -5'
9152 5' -49.2 NC_002512.2 + 164910 0.66 0.999729
Target:  5'- aAGACGCaGUgcgagcucucgCCGCGUaUGUUcuUCGAGGa -3'
miRNA:   3'- -UUUGCGgCAa----------GGUGCA-ACAA--AGCUCC- -5'
9152 5' -49.2 NC_002512.2 + 22522 0.66 0.999659
Target:  5'- gGGACGCCGaa-CGCGUcggUGUcgaUCGGGGc -3'
miRNA:   3'- -UUUGCGGCaagGUGCA---ACAa--AGCUCC- -5'
9152 5' -49.2 NC_002512.2 + 39424 0.66 0.999659
Target:  5'- --uCGCCGUagUCCACGggGgug-GAGGu -3'
miRNA:   3'- uuuGCGGCA--AGGUGCaaCaaagCUCC- -5'
9152 5' -49.2 NC_002512.2 + 208847 0.66 0.999635
Target:  5'- -cGCGCCGUUCC-UGUUuUUcgcuuaaucggcacUCGGGGg -3'
miRNA:   3'- uuUGCGGCAAGGuGCAAcAA--------------AGCUCC- -5'
9152 5' -49.2 NC_002512.2 + 153046 0.67 0.999574
Target:  5'- cGAACGCCGUcggCCGCGg----UUGAGa -3'
miRNA:   3'- -UUUGCGGCAa--GGUGCaacaaAGCUCc -5'
9152 5' -49.2 NC_002512.2 + 151092 0.67 0.999574
Target:  5'- -cGCGCCGgagacgUgCACG-UGUcUCGGGGc -3'
miRNA:   3'- uuUGCGGCa-----AgGUGCaACAaAGCUCC- -5'
9152 5' -49.2 NC_002512.2 + 147292 0.67 0.999471
Target:  5'- -cGCGUCGUUCC-CGggGgggaGAGGa -3'
miRNA:   3'- uuUGCGGCAAGGuGCaaCaaagCUCC- -5'
9152 5' -49.2 NC_002512.2 + 199620 0.67 0.999348
Target:  5'- uGGCGCCGgcUCCGCGcguccgCGGGGa -3'
miRNA:   3'- uUUGCGGCa-AGGUGCaacaaaGCUCC- -5'
9152 5' -49.2 NC_002512.2 + 121153 0.67 0.999292
Target:  5'- gAGACGCCGg-CCGCGgcccagggCGAGGc -3'
miRNA:   3'- -UUUGCGGCaaGGUGCaacaaa--GCUCC- -5'
9152 5' -49.2 NC_002512.2 + 46359 0.67 0.999134
Target:  5'- uGACGCCGgUCCGCagccaggCGAGGa -3'
miRNA:   3'- uUUGCGGCaAGGUGcaacaaaGCUCC- -5'
9152 5' -49.2 NC_002512.2 + 90325 0.67 0.999025
Target:  5'- uAGCGCUGUcCCagguugagACGUUGg--CGAGGa -3'
miRNA:   3'- uUUGCGGCAaGG--------UGCAACaaaGCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.