miRNA display CGI


Results 61 - 80 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9153 5' -57.1 NC_002512.2 + 225525 0.68 0.845539
Target:  5'- -gCUUCGCGGACGGgacggCG-GGAGcGCg- -3'
miRNA:   3'- aaGAAGCGCCUGCUa----GCuCCUC-CGgg -5'
9153 5' -57.1 NC_002512.2 + 130101 0.68 0.860647
Target:  5'- -gUUUUGUGuccGCGGUCGAgagggagcuGGAGGCCCg -3'
miRNA:   3'- aaGAAGCGCc--UGCUAGCU---------CCUCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 2313 0.68 0.867916
Target:  5'- cUCUgcugCGCcGGCGGUCc-GGAGGCCUc -3'
miRNA:   3'- aAGAa---GCGcCUGCUAGcuCCUCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 89870 0.68 0.867916
Target:  5'- gUCUUCGgGGACGGgaCGGGGAuGUCg -3'
miRNA:   3'- aAGAAGCgCCUGCUa-GCUCCUcCGGg -5'
9153 5' -57.1 NC_002512.2 + 3666 0.68 0.874989
Target:  5'- ---cUCGCGGccgACGGUCc-GGAGGUCCu -3'
miRNA:   3'- aagaAGCGCC---UGCUAGcuCCUCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 97271 0.68 0.874989
Target:  5'- --gUUC-CGGgaACGcAUCGGGGAGGCCg -3'
miRNA:   3'- aagAAGcGCC--UGC-UAGCUCCUCCGGg -5'
9153 5' -57.1 NC_002512.2 + 24200 0.68 0.877761
Target:  5'- gUCgUUCGacaGGACGGUgacgccggagcugucCGAGGcgucGGGCCCg -3'
miRNA:   3'- aAG-AAGCg--CCUGCUA---------------GCUCC----UCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 200546 0.68 0.867917
Target:  5'- gUC-UCGCGGucGCGGuaUCGGGGGGaaucgcGCCCg -3'
miRNA:   3'- aAGaAGCGCC--UGCU--AGCUCCUC------CGGG- -5'
9153 5' -57.1 NC_002512.2 + 180137 0.68 0.867917
Target:  5'- gUCcagCGuCGGGCGGUCcAGGAcGGCCUc -3'
miRNA:   3'- aAGaa-GC-GCCUGCUAGcUCCU-CCGGG- -5'
9153 5' -57.1 NC_002512.2 + 123549 0.68 0.845539
Target:  5'- ---cUCGCgGGACGAgcgacCGGGGAGaGCCg -3'
miRNA:   3'- aagaAGCG-CCUGCUa----GCUCCUC-CGGg -5'
9153 5' -57.1 NC_002512.2 + 96745 0.68 0.853186
Target:  5'- ----aC-CGGACGAgCGAGcGGGGCCCc -3'
miRNA:   3'- aagaaGcGCCUGCUaGCUC-CUCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 143564 0.68 0.853186
Target:  5'- gUCUcccCGCGGGCGGgccggCGgagaGGGAGGCgCCc -3'
miRNA:   3'- aAGAa--GCGCCUGCUa----GC----UCCUCCG-GG- -5'
9153 5' -57.1 NC_002512.2 + 197842 0.68 0.853186
Target:  5'- ---aUCGagGGGCGG-CG-GGAGGCCCu -3'
miRNA:   3'- aagaAGCg-CCUGCUaGCuCCUCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 225561 0.68 0.867917
Target:  5'- cUUCUUCG-GcGACGAggccgaccUCGAGGGGcGCCg -3'
miRNA:   3'- -AAGAAGCgC-CUGCU--------AGCUCCUC-CGGg -5'
9153 5' -57.1 NC_002512.2 + 101790 0.68 0.867917
Target:  5'- gUCcUCGCGGcggaGCGcuucCGAGGAGGCUUc -3'
miRNA:   3'- aAGaAGCGCC----UGCua--GCUCCUCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 102205 0.68 0.867917
Target:  5'- cUUCaUCGCGG-CGAucgcgUCGAcGAGGUCCu -3'
miRNA:   3'- -AAGaAGCGCCuGCU-----AGCUcCUCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 154464 0.68 0.867917
Target:  5'- ---aUC-CGGACGucccgcccUCGAGGAGGCaCCu -3'
miRNA:   3'- aagaAGcGCCUGCu-------AGCUCCUCCG-GG- -5'
9153 5' -57.1 NC_002512.2 + 219816 0.68 0.872888
Target:  5'- ----gCGCGGGgcgcgacaggggguCGGUCGGGGGguccGGCCCg -3'
miRNA:   3'- aagaaGCGCCU--------------GCUAGCUCCU----CCGGG- -5'
9153 5' -57.1 NC_002512.2 + 103352 0.68 0.874989
Target:  5'- -----gGCGGACGGcacggUCGAGGucAGGCCg -3'
miRNA:   3'- aagaagCGCCUGCU-----AGCUCC--UCCGGg -5'
9153 5' -57.1 NC_002512.2 + 221343 0.69 0.837711
Target:  5'- cUCgacCGCGGGagaaGAUgGAGGAGcGUCCa -3'
miRNA:   3'- aAGaa-GCGCCUg---CUAgCUCCUC-CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.