miRNA display CGI


Results 81 - 100 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9153 5' -57.1 NC_002512.2 + 134304 0.69 0.821542
Target:  5'- gUCUUCGaGGACG-UCGccGGGGCCg -3'
miRNA:   3'- aAGAAGCgCCUGCuAGCucCUCCGGg -5'
9153 5' -57.1 NC_002512.2 + 226579 0.69 0.821542
Target:  5'- ---gUgGCGGAUGG-CGAGGAGGCa- -3'
miRNA:   3'- aagaAgCGCCUGCUaGCUCCUCCGgg -5'
9153 5' -57.1 NC_002512.2 + 136561 0.69 0.837711
Target:  5'- cUCUU-GCGGAUGAUCcGGGucaGCCCg -3'
miRNA:   3'- aAGAAgCGCCUGCUAGcUCCuc-CGGG- -5'
9153 5' -57.1 NC_002512.2 + 221343 0.69 0.837711
Target:  5'- cUCgacCGCGGGagaaGAUgGAGGAGcGUCCa -3'
miRNA:   3'- aAGaa-GCGCCUg---CUAgCUCCUC-CGGG- -5'
9153 5' -57.1 NC_002512.2 + 185846 0.69 0.821542
Target:  5'- gUUCUUCugggaGCGGuACG-UCGAGGAgGGCgCCu -3'
miRNA:   3'- -AAGAAG-----CGCC-UGCuAGCUCCU-CCG-GG- -5'
9153 5' -57.1 NC_002512.2 + 185184 0.69 0.796107
Target:  5'- cUUCUUcuccgagaaCGCGGcgGCGGUCGAcgccgcGGuGGCCCg -3'
miRNA:   3'- -AAGAA---------GCGCC--UGCUAGCU------CCuCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 123547 0.69 0.804733
Target:  5'- gUCggcgggCGCGGACG-UCGAGGGGGa-- -3'
miRNA:   3'- aAGaa----GCGCCUGCuAGCUCCUCCggg -5'
9153 5' -57.1 NC_002512.2 + 148502 0.69 0.837711
Target:  5'- ----cCGgGGACGGggaCGAGGAGGCggCCg -3'
miRNA:   3'- aagaaGCgCCUGCUa--GCUCCUCCG--GG- -5'
9153 5' -57.1 NC_002512.2 + 83883 0.69 0.803877
Target:  5'- ---gUCGCGGuCGAucgcgucgUCGGGGAagagcugGGCCCa -3'
miRNA:   3'- aagaAGCGCCuGCU--------AGCUCCU-------CCGGG- -5'
9153 5' -57.1 NC_002512.2 + 210393 0.69 0.804733
Target:  5'- cUCUUccgaCGCGGugGGgaacgcggCGGGGAGGCg- -3'
miRNA:   3'- aAGAA----GCGCCugCUa-------GCUCCUCCGgg -5'
9153 5' -57.1 NC_002512.2 + 74830 0.69 0.821542
Target:  5'- -----gGCGGACGAacaacucgguUCGAGG-GGCCUc -3'
miRNA:   3'- aagaagCGCCUGCU----------AGCUCCuCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 111072 0.69 0.821542
Target:  5'- ---cUCGCGGucgcCGAccaCGAcGGGGGCCCa -3'
miRNA:   3'- aagaAGCGCCu---GCUa--GCU-CCUCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 91249 0.69 0.821542
Target:  5'- ---aUCGCGu-CGGUCGGGGuGGUCCc -3'
miRNA:   3'- aagaAGCGCcuGCUAGCUCCuCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 223912 0.69 0.824829
Target:  5'- -gCggCGCGGGCGAgaggucgagccggaCGGGGAGGUCg -3'
miRNA:   3'- aaGaaGCGCCUGCUa-------------GCUCCUCCGGg -5'
9153 5' -57.1 NC_002512.2 + 153406 0.69 0.82971
Target:  5'- ----gCGCGGcgGCGGUCGAGGuGGCg- -3'
miRNA:   3'- aagaaGCGCC--UGCUAGCUCCuCCGgg -5'
9153 5' -57.1 NC_002512.2 + 120512 0.69 0.82971
Target:  5'- ---aUCGCGG-UGA-CGGGGAGGCgCg -3'
miRNA:   3'- aagaAGCGCCuGCUaGCUCCUCCGgG- -5'
9153 5' -57.1 NC_002512.2 + 220075 0.69 0.836125
Target:  5'- cUCUggCGCGGAUccucaccuccuUCGAGGAGGUCg -3'
miRNA:   3'- aAGAa-GCGCCUGcu---------AGCUCCUCCGGg -5'
9153 5' -57.1 NC_002512.2 + 50103 0.7 0.751069
Target:  5'- ----aCGaCGGAcCGGUCGaAGGAGGCCg -3'
miRNA:   3'- aagaaGC-GCCU-GCUAGC-UCCUCCGGg -5'
9153 5' -57.1 NC_002512.2 + 152735 0.7 0.741737
Target:  5'- -gCUUCGgGGGCGGUCG-GaAGGUCCc -3'
miRNA:   3'- aaGAAGCgCCUGCUAGCuCcUCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 17439 0.7 0.787342
Target:  5'- cUCcUCGCGG-CGGUCGcGGccggccGGCCCg -3'
miRNA:   3'- aAGaAGCGCCuGCUAGCuCCu-----CCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.