Results 41 - 60 of 135 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
9153 | 5' | -57.1 | NC_002512.2 | + | 185846 | 0.69 | 0.821542 |
Target: 5'- gUUCUUCugggaGCGGuACG-UCGAGGAgGGCgCCu -3' miRNA: 3'- -AAGAAG-----CGCC-UGCuAGCUCCU-CCG-GG- -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 223912 | 0.69 | 0.824829 |
Target: 5'- -gCggCGCGGGCGAgaggucgagccggaCGGGGAGGUCg -3' miRNA: 3'- aaGaaGCGCCUGCUa-------------GCUCCUCCGGg -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 220075 | 0.69 | 0.836125 |
Target: 5'- cUCUggCGCGGAUccucaccuccuUCGAGGAGGUCg -3' miRNA: 3'- aAGAa-GCGCCUGcu---------AGCUCCUCCGGg -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 111072 | 0.69 | 0.821542 |
Target: 5'- ---cUCGCGGucgcCGAccaCGAcGGGGGCCCa -3' miRNA: 3'- aagaAGCGCCu---GCUa--GCU-CCUCCGGG- -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 74830 | 0.69 | 0.821542 |
Target: 5'- -----gGCGGACGAacaacucgguUCGAGG-GGCCUc -3' miRNA: 3'- aagaagCGCCUGCU----------AGCUCCuCCGGG- -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 210393 | 0.69 | 0.804733 |
Target: 5'- cUCUUccgaCGCGGugGGgaacgcggCGGGGAGGCg- -3' miRNA: 3'- aAGAA----GCGCCugCUa-------GCUCCUCCGgg -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 185184 | 0.69 | 0.796107 |
Target: 5'- cUUCUUcuccgagaaCGCGGcgGCGGUCGAcgccgcGGuGGCCCg -3' miRNA: 3'- -AAGAA---------GCGCC--UGCUAGCU------CCuCCGGG- -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 120512 | 0.69 | 0.82971 |
Target: 5'- ---aUCGCGG-UGA-CGGGGAGGCgCg -3' miRNA: 3'- aagaAGCGCCuGCUaGCUCCUCCGgG- -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 148502 | 0.69 | 0.837711 |
Target: 5'- ----cCGgGGACGGggaCGAGGAGGCggCCg -3' miRNA: 3'- aagaaGCgCCUGCUa--GCUCCUCCG--GG- -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 83883 | 0.69 | 0.803877 |
Target: 5'- ---gUCGCGGuCGAucgcgucgUCGGGGAagagcugGGCCCa -3' miRNA: 3'- aagaAGCGCCuGCU--------AGCUCCU-------CCGGG- -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 85545 | 0.69 | 0.813214 |
Target: 5'- -aCggCGCuGGCGGggcUCGAGGAGGCgCg -3' miRNA: 3'- aaGaaGCGcCUGCU---AGCUCCUCCGgG- -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 134304 | 0.69 | 0.821542 |
Target: 5'- gUCUUCGaGGACG-UCGccGGGGCCg -3' miRNA: 3'- aAGAAGCgCCUGCuAGCucCUCCGGg -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 226579 | 0.69 | 0.821542 |
Target: 5'- ---gUgGCGGAUGG-CGAGGAGGCa- -3' miRNA: 3'- aagaAgCGCCUGCUaGCUCCUCCGgg -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 136561 | 0.69 | 0.837711 |
Target: 5'- cUCUU-GCGGAUGAUCcGGGucaGCCCg -3' miRNA: 3'- aAGAAgCGCCUGCUAGcUCCuc-CGGG- -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 221343 | 0.69 | 0.837711 |
Target: 5'- cUCgacCGCGGGagaaGAUgGAGGAGcGUCCa -3' miRNA: 3'- aAGaa-GCGCCUg---CUAgCUCCUC-CGGG- -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 123547 | 0.69 | 0.804733 |
Target: 5'- gUCggcgggCGCGGACG-UCGAGGGGGa-- -3' miRNA: 3'- aAGaa----GCGCCUGCuAGCUCCUCCggg -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 225525 | 0.68 | 0.845539 |
Target: 5'- -gCUUCGCGGACGGgacggCG-GGAGcGCg- -3' miRNA: 3'- aaGAAGCGCCUGCUa----GCuCCUC-CGgg -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 89870 | 0.68 | 0.867916 |
Target: 5'- gUCUUCGgGGACGGgaCGGGGAuGUCg -3' miRNA: 3'- aAGAAGCgCCUGCUa-GCUCCUcCGGg -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 200546 | 0.68 | 0.867917 |
Target: 5'- gUC-UCGCGGucGCGGuaUCGGGGGGaaucgcGCCCg -3' miRNA: 3'- aAGaAGCGCC--UGCU--AGCUCCUC------CGGG- -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 180137 | 0.68 | 0.867917 |
Target: 5'- gUCcagCGuCGGGCGGUCcAGGAcGGCCUc -3' miRNA: 3'- aAGaa-GC-GCCUGCUAGcUCCU-CCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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