miRNA display CGI


Results 61 - 80 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9153 5' -57.1 NC_002512.2 + 114033 0.7 0.769434
Target:  5'- -cCgggCGCGGugGAcguaGAGGgcGGGCCCg -3'
miRNA:   3'- aaGaa-GCGCCugCUag--CUCC--UCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 116575 0.7 0.769433
Target:  5'- cUUCUaCGUcuacuacaccugGGGCGAgggCG-GGAGGCCCg -3'
miRNA:   3'- -AAGAaGCG------------CCUGCUa--GCuCCUCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 120512 0.69 0.82971
Target:  5'- ---aUCGCGG-UGA-CGGGGAGGCgCg -3'
miRNA:   3'- aagaAGCGCCuGCUaGCUCCUCCGgG- -5'
9153 5' -57.1 NC_002512.2 + 123023 0.66 0.934062
Target:  5'- ---cUCGUGcGCGA-CGAGGAGGUCg -3'
miRNA:   3'- aagaAGCGCcUGCUaGCUCCUCCGGg -5'
9153 5' -57.1 NC_002512.2 + 123400 0.71 0.722815
Target:  5'- gUUCUUCuCGGACGG-CGAGGcggucgAGGUCCc -3'
miRNA:   3'- -AAGAAGcGCCUGCUaGCUCC------UCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 123547 0.69 0.804733
Target:  5'- gUCggcgggCGCGGACG-UCGAGGGGGa-- -3'
miRNA:   3'- aAGaa----GCGCCUGCuAGCUCCUCCggg -5'
9153 5' -57.1 NC_002512.2 + 123549 0.68 0.845539
Target:  5'- ---cUCGCgGGACGAgcgacCGGGGAGaGCCg -3'
miRNA:   3'- aagaAGCG-CCUGCUa----GCUCCUC-CGGg -5'
9153 5' -57.1 NC_002512.2 + 124559 0.72 0.63501
Target:  5'- ---cUCGUcGGCGAg-GAGGAGGCCCg -3'
miRNA:   3'- aagaAGCGcCUGCUagCUCCUCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 126904 0.7 0.760305
Target:  5'- cUUCUcUCGCGG-CGG--GGGGAGGCCg -3'
miRNA:   3'- -AAGA-AGCGCCuGCUagCUCCUCCGGg -5'
9153 5' -57.1 NC_002512.2 + 129186 0.66 0.929142
Target:  5'- ----aCGgGGACGcugCgGAGGAGGCCg -3'
miRNA:   3'- aagaaGCgCCUGCua-G-CUCCUCCGGg -5'
9153 5' -57.1 NC_002512.2 + 130101 0.68 0.860647
Target:  5'- -gUUUUGUGuccGCGGUCGAgagggagcuGGAGGCCCg -3'
miRNA:   3'- aaGAAGCGCc--UGCUAGCU---------CCUCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 130773 0.71 0.722815
Target:  5'- -gCggCGCGGACca-CGAGGAGGgCCg -3'
miRNA:   3'- aaGaaGCGCCUGcuaGCUCCUCCgGG- -5'
9153 5' -57.1 NC_002512.2 + 130838 0.74 0.566278
Target:  5'- ----cCGCGGucgaguaccgGCGGUCGGGcGAGGCCCc -3'
miRNA:   3'- aagaaGCGCC----------UGCUAGCUC-CUCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 134304 0.69 0.821542
Target:  5'- gUCUUCGaGGACG-UCGccGGGGCCg -3'
miRNA:   3'- aAGAAGCgCCUGCuAGCucCUCCGGg -5'
9153 5' -57.1 NC_002512.2 + 136561 0.69 0.837711
Target:  5'- cUCUU-GCGGAUGAUCcGGGucaGCCCg -3'
miRNA:   3'- aAGAAgCGCCUGCUAGcUCCuc-CGGG- -5'
9153 5' -57.1 NC_002512.2 + 139194 0.67 0.881859
Target:  5'- ----aCGCcGACGccGUCGAGGAccuGGCCCu -3'
miRNA:   3'- aagaaGCGcCUGC--UAGCUCCU---CCGGG- -5'
9153 5' -57.1 NC_002512.2 + 140593 0.7 0.787342
Target:  5'- -----gGCGGACGcugCGAGGuGGUCCg -3'
miRNA:   3'- aagaagCGCCUGCua-GCUCCuCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 143564 0.68 0.853186
Target:  5'- gUCUcccCGCGGGCGGgccggCGgagaGGGAGGCgCCc -3'
miRNA:   3'- aAGAa--GCGCCUGCUa----GC----UCCUCCG-GG- -5'
9153 5' -57.1 NC_002512.2 + 145344 0.67 0.901219
Target:  5'- uUUCUUCGUagaaaagaaaGACGAagcgCGAGGGGGCgCg -3'
miRNA:   3'- -AAGAAGCGc---------CUGCUa---GCUCCUCCGgG- -5'
9153 5' -57.1 NC_002512.2 + 145787 0.67 0.881859
Target:  5'- ----cCGCGGGaGGagGuGGAGGCCCg -3'
miRNA:   3'- aagaaGCGCCUgCUagCuCCUCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.