miRNA display CGI


Results 101 - 120 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9153 5' -57.1 NC_002512.2 + 181998 0.73 0.615281
Target:  5'- ---gUgGCGGACGuccUCGGGGucAGGCCCa -3'
miRNA:   3'- aagaAgCGCCUGCu--AGCUCC--UCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 182953 0.66 0.918636
Target:  5'- ---gUUGCGGugGAugaagUCGAaguGGuAGGCCCc -3'
miRNA:   3'- aagaAGCGCCugCU-----AGCU---CC-UCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 185184 0.69 0.796107
Target:  5'- cUUCUUcuccgagaaCGCGGcgGCGGUCGAcgccgcGGuGGCCCg -3'
miRNA:   3'- -AAGAA---------GCGCC--UGCUAGCU------CCuCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 185846 0.69 0.821542
Target:  5'- gUUCUUCugggaGCGGuACG-UCGAGGAgGGCgCCu -3'
miRNA:   3'- -AAGAAG-----CGCC-UGCuAGCUCCU-CCG-GG- -5'
9153 5' -57.1 NC_002512.2 + 189239 0.73 0.615281
Target:  5'- gUCgccgUCGCGGACGucaccGUCGGGGAgagguacgucgaGGUCCg -3'
miRNA:   3'- aAGa---AGCGCCUGC-----UAGCUCCU------------CCGGG- -5'
9153 5' -57.1 NC_002512.2 + 196007 0.67 0.894978
Target:  5'- cUCUccgugCGCGGACGcgaaGGGGGGGaCCg -3'
miRNA:   3'- aAGAa----GCGCCUGCuag-CUCCUCCgGG- -5'
9153 5' -57.1 NC_002512.2 + 197842 0.68 0.853186
Target:  5'- ---aUCGagGGGCGG-CG-GGAGGCCCu -3'
miRNA:   3'- aagaAGCg-CCUGCUaGCuCCUCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 197998 0.67 0.901219
Target:  5'- gUCUUCGCGaGCGggCGAcggacGGGGGCg- -3'
miRNA:   3'- aAGAAGCGCcUGCuaGCU-----CCUCCGgg -5'
9153 5' -57.1 NC_002512.2 + 198672 0.66 0.918636
Target:  5'- -----aGCGuGGCGA-CG-GGGGGCCCg -3'
miRNA:   3'- aagaagCGC-CUGCUaGCuCCUCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 199656 0.66 0.934062
Target:  5'- ----cCGCGGACGGagGAGGGGGa-- -3'
miRNA:   3'- aagaaGCGCCUGCUagCUCCUCCggg -5'
9153 5' -57.1 NC_002512.2 + 200546 0.68 0.867917
Target:  5'- gUC-UCGCGGucGCGGuaUCGGGGGGaaucgcGCCCg -3'
miRNA:   3'- aAGaAGCGCC--UGCU--AGCUCCUC------CGGG- -5'
9153 5' -57.1 NC_002512.2 + 208367 0.67 0.91305
Target:  5'- ----gUGCGuuucGACGA-CGAGGuGGCCCg -3'
miRNA:   3'- aagaaGCGC----CUGCUaGCUCCuCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 209187 0.67 0.881182
Target:  5'- aUCcUCGUGGACGAggagacCGAGcGGcgccugcGGCCCg -3'
miRNA:   3'- aAGaAGCGCCUGCUa-----GCUC-CU-------CCGGG- -5'
9153 5' -57.1 NC_002512.2 + 210393 0.69 0.804733
Target:  5'- cUCUUccgaCGCGGugGGgaacgcggCGGGGAGGCg- -3'
miRNA:   3'- aAGAA----GCGCCugCUa-------GCUCCUCCGgg -5'
9153 5' -57.1 NC_002512.2 + 211767 0.66 0.924
Target:  5'- ----cUGCGGGaGGaCGuGGAGGCCCg -3'
miRNA:   3'- aagaaGCGCCUgCUaGCuCCUCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 212997 0.67 0.907244
Target:  5'- gUCgcCGCGGcCG-UCGGGcccGGGGCCCu -3'
miRNA:   3'- aAGaaGCGCCuGCuAGCUC---CUCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 214829 0.71 0.713241
Target:  5'- ---gUCGCGGugACGAucaugaugcgcuUCGAccuGGAGGCCCa -3'
miRNA:   3'- aagaAGCGCC--UGCU------------AGCU---CCUCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 216575 0.66 0.934062
Target:  5'- -----gGCGGGCcagCGAGGccAGGCCCu -3'
miRNA:   3'- aagaagCGCCUGcuaGCUCC--UCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 219816 0.68 0.872888
Target:  5'- ----gCGCGGGgcgcgacaggggguCGGUCGGGGGguccGGCCCg -3'
miRNA:   3'- aagaaGCGCCU--------------GCUAGCUCCU----CCGGG- -5'
9153 5' -57.1 NC_002512.2 + 219864 0.73 0.615281
Target:  5'- ---aUCGCGGACGggUGAcGAGGCCg -3'
miRNA:   3'- aagaAGCGCCUGCuaGCUcCUCCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.