miRNA display CGI


Results 81 - 100 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9153 5' -57.1 NC_002512.2 + 102518 0.7 0.751069
Target:  5'- ---gUCGCGGcCG-UCGGGGgucAGGCCCc -3'
miRNA:   3'- aagaAGCGCCuGCuAGCUCC---UCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 102507 0.67 0.894978
Target:  5'- -----gGCGGACGGggaggacgagGAGGAGGCCa -3'
miRNA:   3'- aagaagCGCCUGCUag--------CUCCUCCGGg -5'
9153 5' -57.1 NC_002512.2 + 102313 0.67 0.901219
Target:  5'- ---gUCGCGGACGGUCcgucGGGCCUc -3'
miRNA:   3'- aagaAGCGCCUGCUAGcuccUCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 102205 0.68 0.867917
Target:  5'- cUUCaUCGCGG-CGAucgcgUCGAcGAGGUCCu -3'
miRNA:   3'- -AAGaAGCGCCuGCU-----AGCUcCUCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 101885 0.66 0.934062
Target:  5'- ----cCGCGGGCGAaagcgCGGGGAcGCCg -3'
miRNA:   3'- aagaaGCGCCUGCUa----GCUCCUcCGGg -5'
9153 5' -57.1 NC_002512.2 + 101790 0.68 0.867917
Target:  5'- gUCcUCGCGGcggaGCGcuucCGAGGAGGCUUc -3'
miRNA:   3'- aAGaAGCGCC----UGCua--GCUCCUCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 100474 0.67 0.888524
Target:  5'- gUUCUcggUCGUGGccCGGaccUUGGGGAGGCCg -3'
miRNA:   3'- -AAGA---AGCGCCu-GCU---AGCUCCUCCGGg -5'
9153 5' -57.1 NC_002512.2 + 99899 0.66 0.918087
Target:  5'- ----gCGCGGcCcGUCGAGGgcgccggGGGCCCg -3'
miRNA:   3'- aagaaGCGCCuGcUAGCUCC-------UCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 99622 0.66 0.93876
Target:  5'- cUCgUCGCGGuCG-UCGcccucGGAgGGCCCg -3'
miRNA:   3'- aAGaAGCGCCuGCuAGCu----CCU-CCGGG- -5'
9153 5' -57.1 NC_002512.2 + 97271 0.68 0.874989
Target:  5'- --gUUC-CGGgaACGcAUCGGGGAGGCCg -3'
miRNA:   3'- aagAAGcGCC--UGC-UAGCUCCUCCGGg -5'
9153 5' -57.1 NC_002512.2 + 96745 0.68 0.853186
Target:  5'- ----aC-CGGACGAgCGAGcGGGGCCCc -3'
miRNA:   3'- aagaaGcGCCUGCUaGCUC-CUCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 94642 0.8 0.260256
Target:  5'- -gCggCGCGGACGAcggccUCGAGGcGGCCCg -3'
miRNA:   3'- aaGaaGCGCCUGCU-----AGCUCCuCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 94138 0.66 0.943238
Target:  5'- ----aCGCGGAUGAcgCGGcGGAGGCa- -3'
miRNA:   3'- aagaaGCGCCUGCUa-GCU-CCUCCGgg -5'
9153 5' -57.1 NC_002512.2 + 93119 0.71 0.693908
Target:  5'- gUUCUUCGUgcuGGACGG-CGAGGAcGCCa -3'
miRNA:   3'- -AAGAAGCG---CCUGCUaGCUCCUcCGGg -5'
9153 5' -57.1 NC_002512.2 + 91249 0.69 0.821542
Target:  5'- ---aUCGCGu-CGGUCGGGGuGGUCCc -3'
miRNA:   3'- aagaAGCGCcuGCUAGCUCCuCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 89870 0.68 0.867916
Target:  5'- gUCUUCGgGGACGGgaCGGGGAuGUCg -3'
miRNA:   3'- aAGAAGCgCCUGCUa-GCUCCUcCGGg -5'
9153 5' -57.1 NC_002512.2 + 87821 0.71 0.732316
Target:  5'- -----gGCGGGCGGUCGGaGGGGCCg -3'
miRNA:   3'- aagaagCGCCUGCUAGCUcCUCCGGg -5'
9153 5' -57.1 NC_002512.2 + 86669 0.67 0.907244
Target:  5'- gUCcgaGCGGACGGcgcgCGAGGGGGacggcaCCa -3'
miRNA:   3'- aAGaagCGCCUGCUa---GCUCCUCCg-----GG- -5'
9153 5' -57.1 NC_002512.2 + 86643 0.67 0.907244
Target:  5'- -gCggUGUGGugGAUCGcGGuGGCCg -3'
miRNA:   3'- aaGaaGCGCCugCUAGCuCCuCCGGg -5'
9153 5' -57.1 NC_002512.2 + 86224 0.76 0.463087
Target:  5'- -gCUUCGgGGAgGGggaCGAGGAGGaCCCg -3'
miRNA:   3'- aaGAAGCgCCUgCUa--GCUCCUCC-GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.