Results 101 - 120 of 135 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9153 | 5' | -57.1 | NC_002512.2 | + | 179309 | 0.66 | 0.934062 |
Target: 5'- ----cCGCGGGCGG-CGAGGcGGGCa- -3' miRNA: 3'- aagaaGCGCCUGCUaGCUCC-UCCGgg -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 199656 | 0.66 | 0.934062 |
Target: 5'- ----cCGCGGACGGagGAGGGGGa-- -3' miRNA: 3'- aagaaGCGCCUGCUagCUCCUCCggg -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 221607 | 0.66 | 0.934062 |
Target: 5'- gUCg--GUGGACGG-CGAGGAGGgagcggguccaCCCg -3' miRNA: 3'- aAGaagCGCCUGCUaGCUCCUCC-----------GGG- -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 99622 | 0.66 | 0.93876 |
Target: 5'- cUCgUCGCGGuCG-UCGcccucGGAgGGCCCg -3' miRNA: 3'- aAGaAGCGCCuGCuAGCu----CCU-CCGGG- -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 94138 | 0.66 | 0.943238 |
Target: 5'- ----aCGCGGAUGAcgCGGcGGAGGCa- -3' miRNA: 3'- aagaaGCGCCUGCUa-GCU-CCUCCGgg -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 211767 | 0.66 | 0.924 |
Target: 5'- ----cUGCGGGaGGaCGuGGAGGCCCg -3' miRNA: 3'- aagaaGCGCCUgCUaGCuCCUCCGGG- -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 182953 | 0.66 | 0.918636 |
Target: 5'- ---gUUGCGGugGAugaagUCGAaguGGuAGGCCCc -3' miRNA: 3'- aagaAGCGCCugCU-----AGCU---CC-UCCGGG- -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 164649 | 0.67 | 0.894978 |
Target: 5'- -----gGCGG-CGAUCGGGGuGGCUa -3' miRNA: 3'- aagaagCGCCuGCUAGCUCCuCCGGg -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 196007 | 0.67 | 0.894978 |
Target: 5'- cUCUccgugCGCGGACGcgaaGGGGGGGaCCg -3' miRNA: 3'- aAGAa----GCGCCUGCuag-CUCCUCCgGG- -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 146794 | 0.67 | 0.901219 |
Target: 5'- ----cCGcCGGACccg-GAGGAGGCCCg -3' miRNA: 3'- aagaaGC-GCCUGcuagCUCCUCCGGG- -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 102313 | 0.67 | 0.901219 |
Target: 5'- ---gUCGCGGACGGUCcgucGGGCCUc -3' miRNA: 3'- aagaAGCGCCUGCUAGcuccUCCGGG- -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 197998 | 0.67 | 0.901219 |
Target: 5'- gUCUUCGCGaGCGggCGAcggacGGGGGCg- -3' miRNA: 3'- aAGAAGCGCcUGCuaGCU-----CCUCCGgg -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 160689 | 0.67 | 0.907244 |
Target: 5'- -aCUUCGgGGGgGAcuUCGGGGGGGaCUUg -3' miRNA: 3'- aaGAAGCgCCUgCU--AGCUCCUCC-GGG- -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 212997 | 0.67 | 0.907244 |
Target: 5'- gUCgcCGCGGcCG-UCGGGcccGGGGCCCu -3' miRNA: 3'- aAGaaGCGCCuGCuAGCUC---CUCCGGG- -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 225805 | 0.67 | 0.907244 |
Target: 5'- ----cCGCGGGCGGcCG-GGuGGCCUg -3' miRNA: 3'- aagaaGCGCCUGCUaGCuCCuCCGGG- -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 227959 | 0.67 | 0.91305 |
Target: 5'- ----gCGCGGGgGAgccggaGAGGAgGGCCCc -3' miRNA: 3'- aagaaGCGCCUgCUag----CUCCU-CCGGG- -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 208367 | 0.67 | 0.91305 |
Target: 5'- ----gUGCGuuucGACGA-CGAGGuGGCCCg -3' miRNA: 3'- aagaaGCGC----CUGCUaGCUCCuCCGGG- -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 171735 | 0.67 | 0.91305 |
Target: 5'- ---aUCG-GGACG-UCGAGcucGGGGCCCu -3' miRNA: 3'- aagaAGCgCCUGCuAGCUC---CUCCGGG- -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 198672 | 0.66 | 0.918636 |
Target: 5'- -----aGCGuGGCGA-CG-GGGGGCCCg -3' miRNA: 3'- aagaagCGC-CUGCUaGCuCCUCCGGG- -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 226466 | 0.66 | 0.918636 |
Target: 5'- ----cCGCGaGGCGG--GAGGAGGCCg -3' miRNA: 3'- aagaaGCGC-CUGCUagCUCCUCCGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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