miRNA display CGI


Results 121 - 135 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9153 5' -57.1 NC_002512.2 + 209187 0.67 0.881182
Target:  5'- aUCcUCGUGGACGAggagacCGAGcGGcgccugcGGCCCg -3'
miRNA:   3'- aAGaAGCGCCUGCUa-----GCUC-CU-------CCGGG- -5'
9153 5' -57.1 NC_002512.2 + 145787 0.67 0.881859
Target:  5'- ----cCGCGGGaGGagGuGGAGGCCCg -3'
miRNA:   3'- aagaaGCGCCUgCUagCuCCUCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 158909 0.67 0.881859
Target:  5'- cUCggUCGCGGcCGAguacggcuUCGGcGGGGGCgCCg -3'
miRNA:   3'- aAGa-AGCGCCuGCU--------AGCU-CCUCCG-GG- -5'
9153 5' -57.1 NC_002512.2 + 100474 0.67 0.888524
Target:  5'- gUUCUcggUCGUGGccCGGaccUUGGGGAGGCCg -3'
miRNA:   3'- -AAGA---AGCGCCu-GCU---AGCUCCUCCGGg -5'
9153 5' -57.1 NC_002512.2 + 102507 0.67 0.894978
Target:  5'- -----gGCGGACGGggaggacgagGAGGAGGCCa -3'
miRNA:   3'- aagaagCGCCUGCUag--------CUCCUCCGGg -5'
9153 5' -57.1 NC_002512.2 + 164649 0.67 0.894978
Target:  5'- -----gGCGG-CGAUCGGGGuGGCUa -3'
miRNA:   3'- aagaagCGCCuGCUAGCUCCuCCGGg -5'
9153 5' -57.1 NC_002512.2 + 196007 0.67 0.894978
Target:  5'- cUCUccgugCGCGGACGcgaaGGGGGGGaCCg -3'
miRNA:   3'- aAGAa----GCGCCUGCuag-CUCCUCCgGG- -5'
9153 5' -57.1 NC_002512.2 + 146794 0.67 0.901219
Target:  5'- ----cCGcCGGACccg-GAGGAGGCCCg -3'
miRNA:   3'- aagaaGC-GCCUGcuagCUCCUCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 102313 0.67 0.901219
Target:  5'- ---gUCGCGGACGGUCcgucGGGCCUc -3'
miRNA:   3'- aagaAGCGCCUGCUAGcuccUCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 197998 0.67 0.901219
Target:  5'- gUCUUCGCGaGCGggCGAcggacGGGGGCg- -3'
miRNA:   3'- aAGAAGCGCcUGCuaGCU-----CCUCCGgg -5'
9153 5' -57.1 NC_002512.2 + 160689 0.67 0.907244
Target:  5'- -aCUUCGgGGGgGAcuUCGGGGGGGaCUUg -3'
miRNA:   3'- aaGAAGCgCCUgCU--AGCUCCUCC-GGG- -5'
9153 5' -57.1 NC_002512.2 + 212997 0.67 0.907244
Target:  5'- gUCgcCGCGGcCG-UCGGGcccGGGGCCCu -3'
miRNA:   3'- aAGaaGCGCCuGCuAGCUC---CUCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 225805 0.67 0.907244
Target:  5'- ----cCGCGGGCGGcCG-GGuGGCCUg -3'
miRNA:   3'- aagaaGCGCCUGCUaGCuCCuCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 227959 0.67 0.91305
Target:  5'- ----gCGCGGGgGAgccggaGAGGAgGGCCCc -3'
miRNA:   3'- aagaaGCGCCUgCUag----CUCCU-CCGGG- -5'
9153 5' -57.1 NC_002512.2 + 226908 0.66 0.943238
Target:  5'- ----aCGCGGGaGGcCaAGGAGGCCCg -3'
miRNA:   3'- aagaaGCGCCUgCUaGcUCCUCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.