miRNA display CGI


Results 41 - 60 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9153 5' -57.1 NC_002512.2 + 209187 0.67 0.881182
Target:  5'- aUCcUCGUGGACGAggagacCGAGcGGcgccugcGGCCCg -3'
miRNA:   3'- aAGaAGCGCCUGCUa-----GCUC-CU-------CCGGG- -5'
9153 5' -57.1 NC_002512.2 + 198672 0.66 0.918636
Target:  5'- -----aGCGuGGCGA-CG-GGGGGCCCg -3'
miRNA:   3'- aagaagCGC-CUGCUaGCuCCUCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 99622 0.66 0.93876
Target:  5'- cUCgUCGCGGuCG-UCGcccucGGAgGGCCCg -3'
miRNA:   3'- aAGaAGCGCCuGCuAGCu----CCU-CCGGG- -5'
9153 5' -57.1 NC_002512.2 + 145787 0.67 0.881859
Target:  5'- ----cCGCGGGaGGagGuGGAGGCCCg -3'
miRNA:   3'- aagaaGCGCCUgCUagCuCCUCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 94138 0.66 0.943238
Target:  5'- ----aCGCGGAUGAcgCGGcGGAGGCa- -3'
miRNA:   3'- aagaaGCGCCUGCUa-GCU-CCUCCGgg -5'
9153 5' -57.1 NC_002512.2 + 210393 0.69 0.804733
Target:  5'- cUCUUccgaCGCGGugGGgaacgcggCGGGGAGGCg- -3'
miRNA:   3'- aAGAA----GCGCCugCUa-------GCUCCUCCGgg -5'
9153 5' -57.1 NC_002512.2 + 199656 0.66 0.934062
Target:  5'- ----cCGCGGACGGagGAGGGGGa-- -3'
miRNA:   3'- aagaaGCGCCUGCUagCUCCUCCggg -5'
9153 5' -57.1 NC_002512.2 + 91249 0.69 0.821542
Target:  5'- ---aUCGCGu-CGGUCGGGGuGGUCCc -3'
miRNA:   3'- aagaAGCGCcuGCUAGCUCCuCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 153406 0.69 0.82971
Target:  5'- ----gCGCGGcgGCGGUCGAGGuGGCg- -3'
miRNA:   3'- aagaaGCGCC--UGCUAGCUCCuCCGgg -5'
9153 5' -57.1 NC_002512.2 + 123549 0.68 0.845539
Target:  5'- ---cUCGCgGGACGAgcgacCGGGGAGaGCCg -3'
miRNA:   3'- aagaAGCG-CCUGCUa----GCUCCUC-CGGg -5'
9153 5' -57.1 NC_002512.2 + 197842 0.68 0.853186
Target:  5'- ---aUCGagGGGCGG-CG-GGAGGCCCu -3'
miRNA:   3'- aagaAGCg-CCUGCUaGCuCCUCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 101790 0.68 0.867917
Target:  5'- gUCcUCGCGGcggaGCGcuucCGAGGAGGCUUc -3'
miRNA:   3'- aAGaAGCGCC----UGCua--GCUCCUCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 219816 0.68 0.872888
Target:  5'- ----gCGCGGGgcgcgacaggggguCGGUCGGGGGguccGGCCCg -3'
miRNA:   3'- aagaaGCGCCU--------------GCUAGCUCCU----CCGGG- -5'
9153 5' -57.1 NC_002512.2 + 102507 0.67 0.894978
Target:  5'- -----gGCGGACGGggaggacgagGAGGAGGCCa -3'
miRNA:   3'- aagaagCGCCUGCUag--------CUCCUCCGGg -5'
9153 5' -57.1 NC_002512.2 + 146794 0.67 0.901219
Target:  5'- ----cCGcCGGACccg-GAGGAGGCCCg -3'
miRNA:   3'- aagaaGC-GCCUGcuagCUCCUCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 212997 0.67 0.907244
Target:  5'- gUCgcCGCGGcCG-UCGGGcccGGGGCCCu -3'
miRNA:   3'- aAGaaGCGCCuGCuAGCUC---CUCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 208367 0.67 0.91305
Target:  5'- ----gUGCGuuucGACGA-CGAGGuGGCCCg -3'
miRNA:   3'- aagaaGCGC----CUGCUaGCUCCuCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 211767 0.66 0.924
Target:  5'- ----cUGCGGGaGGaCGuGGAGGCCCg -3'
miRNA:   3'- aagaaGCGCCUgCUaGCuCCUCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 167224 0.66 0.93358
Target:  5'- gUCUUCGuCGGcuuccgcGgGAUCGGGcgaGAGGUCCu -3'
miRNA:   3'- aAGAAGC-GCC-------UgCUAGCUC---CUCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 227355 0.66 0.934062
Target:  5'- ----aCG-GGACG---GAGGAGGCCCg -3'
miRNA:   3'- aagaaGCgCCUGCuagCUCCUCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.