Results 81 - 100 of 135 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9153 | 5' | -57.1 | NC_002512.2 | + | 28896 | 0.66 | 0.918636 |
Target: 5'- cUgUUCGCGGACGAga-AGGuGGaCCUg -3' miRNA: 3'- aAgAAGCGCCUGCUagcUCCuCC-GGG- -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 130838 | 0.74 | 0.566278 |
Target: 5'- ----cCGCGGucgaguaccgGCGGUCGGGcGAGGCCCc -3' miRNA: 3'- aagaaGCGCC----------UGCUAGCUC-CUCCGGG- -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 99899 | 0.66 | 0.918087 |
Target: 5'- ----gCGCGGcCcGUCGAGGgcgccggGGGCCCg -3' miRNA: 3'- aagaaGCGCCuGcUAGCUCC-------UCCGGG- -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 50103 | 0.7 | 0.751069 |
Target: 5'- ----aCGaCGGAcCGGUCGaAGGAGGCCg -3' miRNA: 3'- aagaaGC-GCCU-GCUAGC-UCCUCCGGg -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 11282 | 0.66 | 0.934062 |
Target: 5'- cUUCgagucCGCGGGCGAgacccCGGGGAGaCCUc -3' miRNA: 3'- -AAGaa---GCGCCUGCUa----GCUCCUCcGGG- -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 123023 | 0.66 | 0.934062 |
Target: 5'- ---cUCGUGcGCGA-CGAGGAGGUCg -3' miRNA: 3'- aagaAGCGCcUGCUaGCUCCUCCGGg -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 30397 | 0.66 | 0.920808 |
Target: 5'- aUCcUCGCGGcccugACGGaCGGGGAcgcgggcgucgucgcGGCCCu -3' miRNA: 3'- aAGaAGCGCC-----UGCUaGCUCCU---------------CCGGG- -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 89870 | 0.68 | 0.867916 |
Target: 5'- gUCUUCGgGGACGGgaCGGGGAuGUCg -3' miRNA: 3'- aAGAAGCgCCUGCUa-GCUCCUcCGGg -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 130101 | 0.68 | 0.860647 |
Target: 5'- -gUUUUGUGuccGCGGUCGAgagggagcuGGAGGCCCg -3' miRNA: 3'- aaGAAGCGCc--UGCUAGCU---------CCUCCGGG- -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 221343 | 0.69 | 0.837711 |
Target: 5'- cUCgacCGCGGGagaaGAUgGAGGAGcGUCCa -3' miRNA: 3'- aAGaa-GCGCCUg---CUAgCUCCUC-CGGG- -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 226579 | 0.69 | 0.821542 |
Target: 5'- ---gUgGCGGAUGG-CGAGGAGGCa- -3' miRNA: 3'- aagaAgCGCCUGCUaGCUCCUCCGgg -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 134304 | 0.69 | 0.821542 |
Target: 5'- gUCUUCGaGGACG-UCGccGGGGCCg -3' miRNA: 3'- aAGAAGCgCCUGCuAGCucCUCCGGg -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 85545 | 0.69 | 0.813214 |
Target: 5'- -aCggCGCuGGCGGggcUCGAGGAGGCgCg -3' miRNA: 3'- aaGaaGCGcCUGCU---AGCUCCUCCGgG- -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 123547 | 0.69 | 0.804733 |
Target: 5'- gUCggcgggCGCGGACG-UCGAGGGGGa-- -3' miRNA: 3'- aAGaa----GCGCCUGCuAGCUCCUCCggg -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 11397 | 0.66 | 0.943238 |
Target: 5'- cUCggaCGCGGACGAcccgcgggaCGAGGAgaugaccgcGGUCCg -3' miRNA: 3'- aAGaa-GCGCCUGCUa--------GCUCCU---------CCGGG- -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 81428 | 0.66 | 0.943238 |
Target: 5'- ---gUCGCGGcucCGuccCGcGGGGGGCCCg -3' miRNA: 3'- aagaAGCGCCu--GCua-GC-UCCUCCGGG- -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 136561 | 0.69 | 0.837711 |
Target: 5'- cUCUU-GCGGAUGAUCcGGGucaGCCCg -3' miRNA: 3'- aAGAAgCGCCUGCUAGcUCCuc-CGGG- -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 10450 | 0.66 | 0.943238 |
Target: 5'- ----aCGgGGGCGcg-GAGGAGGCCg -3' miRNA: 3'- aagaaGCgCCUGCuagCUCCUCCGGg -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 153636 | 0.66 | 0.93876 |
Target: 5'- -cCUUCgGCGGACGGgagCGGGGGcacGCUCc -3' miRNA: 3'- aaGAAG-CGCCUGCUa--GCUCCUc--CGGG- -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 38649 | 0.66 | 0.93876 |
Target: 5'- -cCUgucCGCGGGuac-CGAGGAGGCCg -3' miRNA: 3'- aaGAa--GCGCCUgcuaGCUCCUCCGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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