miRNA display CGI


Results 101 - 120 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9153 5' -57.1 NC_002512.2 + 78848 0.66 0.924
Target:  5'- ----cCGCGuGACGGgccgccgccUCGAGGuGGCUCg -3'
miRNA:   3'- aagaaGCGC-CUGCU---------AGCUCCuCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 25288 0.66 0.93358
Target:  5'- cUCcUCGCuGGugGAguccaauccccagUCGGGGucGCCCc -3'
miRNA:   3'- aAGaAGCG-CCugCU-------------AGCUCCucCGGG- -5'
9153 5' -57.1 NC_002512.2 + 11282 0.66 0.934062
Target:  5'- cUUCgagucCGCGGGCGAgacccCGGGGAGaCCUc -3'
miRNA:   3'- -AAGaa---GCGCCUGCUa----GCUCCUCcGGG- -5'
9153 5' -57.1 NC_002512.2 + 123023 0.66 0.934062
Target:  5'- ---cUCGUGcGCGA-CGAGGAGGUCg -3'
miRNA:   3'- aagaAGCGCcUGCUaGCUCCUCCGGg -5'
9153 5' -57.1 NC_002512.2 + 38649 0.66 0.93876
Target:  5'- -cCUgucCGCGGGuac-CGAGGAGGCCg -3'
miRNA:   3'- aaGAa--GCGCCUgcuaGCUCCUCCGGg -5'
9153 5' -57.1 NC_002512.2 + 153636 0.66 0.93876
Target:  5'- -cCUUCgGCGGACGGgagCGGGGGcacGCUCc -3'
miRNA:   3'- aaGAAG-CGCCUGCUa--GCUCCUc--CGGG- -5'
9153 5' -57.1 NC_002512.2 + 81428 0.66 0.943238
Target:  5'- ---gUCGCGGcucCGuccCGcGGGGGGCCCg -3'
miRNA:   3'- aagaAGCGCCu--GCua-GC-UCCUCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 86643 0.67 0.907244
Target:  5'- -gCggUGUGGugGAUCGcGGuGGCCg -3'
miRNA:   3'- aaGaaGCGCCugCUAGCuCCuCCGGg -5'
9153 5' -57.1 NC_002512.2 + 151797 0.67 0.907244
Target:  5'- gUC-UCuCGGGCGGUCGGGaGAGagaagcGCCCg -3'
miRNA:   3'- aAGaAGcGCCUGCUAGCUC-CUC------CGGG- -5'
9153 5' -57.1 NC_002512.2 + 136561 0.69 0.837711
Target:  5'- cUCUU-GCGGAUGAUCcGGGucaGCCCg -3'
miRNA:   3'- aAGAAgCGCCUGCUAGcUCCuc-CGGG- -5'
9153 5' -57.1 NC_002512.2 + 221343 0.69 0.837711
Target:  5'- cUCgacCGCGGGagaaGAUgGAGGAGcGUCCa -3'
miRNA:   3'- aAGaa-GCGCCUg---CUAgCUCCUC-CGGG- -5'
9153 5' -57.1 NC_002512.2 + 130101 0.68 0.860647
Target:  5'- -gUUUUGUGuccGCGGUCGAgagggagcuGGAGGCCCg -3'
miRNA:   3'- aaGAAGCGCc--UGCUAGCU---------CCUCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 89870 0.68 0.867916
Target:  5'- gUCUUCGgGGACGGgaCGGGGAuGUCg -3'
miRNA:   3'- aAGAAGCgCCUGCUa-GCUCCUcCGGg -5'
9153 5' -57.1 NC_002512.2 + 139194 0.67 0.881859
Target:  5'- ----aCGCcGACGccGUCGAGGAccuGGCCCu -3'
miRNA:   3'- aagaaGCGcCUGC--UAGCUCCU---CCGGG- -5'
9153 5' -57.1 NC_002512.2 + 83372 0.67 0.881859
Target:  5'- ----aUGUGGACGAUCGucgcGGAGaCCCg -3'
miRNA:   3'- aagaaGCGCCUGCUAGCu---CCUCcGGG- -5'
9153 5' -57.1 NC_002512.2 + 73231 0.67 0.888524
Target:  5'- gUCgUCGCGGGCGAagguccccUCGAaGGGcaccGGCCg -3'
miRNA:   3'- aAGaAGCGCCUGCU--------AGCU-CCU----CCGGg -5'
9153 5' -57.1 NC_002512.2 + 77313 0.67 0.888524
Target:  5'- -gUUUCGCGaGGCGA-CGGGGucucGGGCUCc -3'
miRNA:   3'- aaGAAGCGC-CUGCUaGCUCC----UCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 64656 0.67 0.901219
Target:  5'- ---gUCGUGGAUcacGUCGcGGAGGUCCu -3'
miRNA:   3'- aagaAGCGCCUGc--UAGCuCCUCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 145344 0.67 0.901219
Target:  5'- uUUCUUCGUagaaaagaaaGACGAagcgCGAGGGGGCgCg -3'
miRNA:   3'- -AAGAAGCGc---------CUGCUa---GCUCCUCCGgG- -5'
9153 5' -57.1 NC_002512.2 + 149835 0.67 0.901219
Target:  5'- gUUCgcgUCGCGGACGGagaUGGGGAucuuuuucacgGGUCCc -3'
miRNA:   3'- -AAGa--AGCGCCUGCUa--GCUCCU-----------CCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.