miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9154 3' -53.6 NC_002512.2 + 229480 0.7 0.900323
Target:  5'- aAGGGGggGGAgGugGAUGucaagaaagggcggGUgGGCGGa -3'
miRNA:   3'- -UCCCCuuCCUgCugCUAC--------------UAgCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 229452 0.66 0.980312
Target:  5'- gGGGGGggGGcuuuGCGGCGucGGUCG-CGGg -3'
miRNA:   3'- -UCCCCuuCC----UGCUGCuaCUAGCuGUU- -5'
9154 3' -53.6 NC_002512.2 + 228949 0.67 0.975689
Target:  5'- gAGGGGggGaGACGGCGGaGAggaaCGAa-- -3'
miRNA:   3'- -UCCCCuuC-CUGCUGCUaCUa---GCUguu -5'
9154 3' -53.6 NC_002512.2 + 228901 0.72 0.82869
Target:  5'- cAGGGaGGAGGACGACGcgagagagGA-CGACGAg -3'
miRNA:   3'- -UCCC-CUUCCUGCUGCua------CUaGCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 228802 0.66 0.984246
Target:  5'- gAGaGGGAGGGACGGgGA-GAcCGGCc- -3'
miRNA:   3'- -UC-CCCUUCCUGCUgCUaCUaGCUGuu -5'
9154 3' -53.6 NC_002512.2 + 228475 0.66 0.980312
Target:  5'- aGGGGGAccgagGGGACcgaaGACGcgGAggGGCGAg -3'
miRNA:   3'- -UCCCCU-----UCCUG----CUGCuaCUagCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 227905 0.66 0.984246
Target:  5'- cGGGGAAaauGGAgaaGGCGAUGGaaGACAGc -3'
miRNA:   3'- uCCCCUU---CCUg--CUGCUACUagCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 227829 0.67 0.970319
Target:  5'- -cGGGAagGGGACGugGA-GA-CGACGAc -3'
miRNA:   3'- ucCCCU--UCCUGCugCUaCUaGCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 227751 0.72 0.82869
Target:  5'- cGGGGGAGG-CGACGAccGAacgcUCGACGc -3'
miRNA:   3'- uCCCCUUCCuGCUGCUa-CU----AGCUGUu -5'
9154 3' -53.6 NC_002512.2 + 227541 0.71 0.86057
Target:  5'- cGGGGGGAGGAgGGCGGguccgCGACc- -3'
miRNA:   3'- -UCCCCUUCCUgCUGCUacua-GCUGuu -5'
9154 3' -53.6 NC_002512.2 + 226604 0.74 0.728108
Target:  5'- cGGGGGAggagGGGACGGCGAcGcagCGACGGg -3'
miRNA:   3'- -UCCCCU----UCCUGCUGCUaCua-GCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 225997 0.66 0.985973
Target:  5'- aAGGGGAccGGGACGcCGGUGc-UGACu- -3'
miRNA:   3'- -UCCCCU--UCCUGCuGCUACuaGCUGuu -5'
9154 3' -53.6 NC_002512.2 + 225928 0.71 0.86057
Target:  5'- gAGGGGAc-GACGACGAcGA-CGACGAc -3'
miRNA:   3'- -UCCCCUucCUGCUGCUaCUaGCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 223726 0.66 0.985973
Target:  5'- -cGGGGAGGACGAcCGGgagaccGUCGugGAg -3'
miRNA:   3'- ucCCCUUCCUGCU-GCUac----UAGCugUU- -5'
9154 3' -53.6 NC_002512.2 + 223275 0.66 0.988573
Target:  5'- gGGGGGcGGGACGccgcgcgcagcuacAUGGUGccgccgGUCGACAc -3'
miRNA:   3'- -UCCCCuUCCUGC--------------UGCUAC------UAGCUGUu -5'
9154 3' -53.6 NC_002512.2 + 221289 0.75 0.698464
Target:  5'- gAGGGGggGGAgGcCGG-GGUCGGCGGg -3'
miRNA:   3'- -UCCCCuuCCUgCuGCUaCUAGCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 219946 0.68 0.964149
Target:  5'- cGGGGGAGGGugGAUcccccgGGUCGcGCGc -3'
miRNA:   3'- -UCCCCUUCCugCUGcua---CUAGC-UGUu -5'
9154 3' -53.6 NC_002512.2 + 219796 0.7 0.889213
Target:  5'- cGGGGAcacagauagGGGACGcGCGggGcgCGACAGg -3'
miRNA:   3'- uCCCCU---------UCCUGC-UGCuaCuaGCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 212537 0.77 0.587276
Target:  5'- -cGGGAucgucgacgGGGACGACGAUGA-CGACGAc -3'
miRNA:   3'- ucCCCU---------UCCUGCUGCUACUaGCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 204841 0.69 0.925455
Target:  5'- --cGGGAGGACGACGgcGGUCGGu-- -3'
miRNA:   3'- uccCCUUCCUGCUGCuaCUAGCUguu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.