miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9154 3' -53.6 NC_002512.2 + 114216 0.67 0.978091
Target:  5'- gAGGcGGAA-GAUGGCGGUGAugugguccucaUCGACGg -3'
miRNA:   3'- -UCC-CCUUcCUGCUGCUACU-----------AGCUGUu -5'
9154 3' -53.6 NC_002512.2 + 75551 0.66 0.98899
Target:  5'- uGGcGGAGGACGACGAcgcgGA-CGACu- -3'
miRNA:   3'- uCCcCUUCCUGCUGCUa---CUaGCUGuu -5'
9154 3' -53.6 NC_002512.2 + 223275 0.66 0.988573
Target:  5'- gGGGGGcGGGACGccgcgcgcagcuacAUGGUGccgccgGUCGACAc -3'
miRNA:   3'- -UCCCCuUCCUGC--------------UGCUAC------UAGCUGUu -5'
9154 3' -53.6 NC_002512.2 + 159545 0.66 0.984246
Target:  5'- cAGaGGAacGGGGCGACGGUGAUCc---- -3'
miRNA:   3'- -UCcCCU--UCCUGCUGCUACUAGcuguu -5'
9154 3' -53.6 NC_002512.2 + 228802 0.66 0.984246
Target:  5'- gAGaGGGAGGGACGGgGA-GAcCGGCc- -3'
miRNA:   3'- -UC-CCCUUCCUGCUgCUaCUaGCUGuu -5'
9154 3' -53.6 NC_002512.2 + 157161 0.66 0.987552
Target:  5'- cGGcGGGccGGGCGGCG-UGggCGGCGg -3'
miRNA:   3'- -UC-CCCuuCCUGCUGCuACuaGCUGUu -5'
9154 3' -53.6 NC_002512.2 + 223726 0.66 0.985973
Target:  5'- -cGGGGAGGACGAcCGGgagaccGUCGugGAg -3'
miRNA:   3'- ucCCCUUCCUGCU-GCUac----UAGCugUU- -5'
9154 3' -53.6 NC_002512.2 + 145056 0.66 0.984246
Target:  5'- -cGGGAGaucgaccacguGGACG-CGAaGAUCGACGAg -3'
miRNA:   3'- ucCCCUU-----------CCUGCuGCUaCUAGCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 228475 0.66 0.980312
Target:  5'- aGGGGGAccgagGGGACcgaaGACGcgGAggGGCGAg -3'
miRNA:   3'- -UCCCCU-----UCCUG----CUGCuaCUagCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 192465 0.67 0.975689
Target:  5'- cGGGGAGGGcAUGuCG--GAUCGACGc -3'
miRNA:   3'- uCCCCUUCC-UGCuGCuaCUAGCUGUu -5'
9154 3' -53.6 NC_002512.2 + 77029 1.06 0.010936
Target:  5'- gAGGGGAAGGACGACGAUGAUCGACAAu -3'
miRNA:   3'- -UCCCCUUCCUGCUGCUACUAGCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 158846 0.66 0.987552
Target:  5'- cGGGGGAgcGGGGgGACGucgucGUCGACc- -3'
miRNA:   3'- -UCCCCU--UCCUgCUGCuac--UAGCUGuu -5'
9154 3' -53.6 NC_002512.2 + 189896 0.66 0.987552
Target:  5'- cGGcGGcGAGGACGGCGgcGAggaCGGCGg -3'
miRNA:   3'- uCC-CC-UUCCUGCUGCuaCUa--GCUGUu -5'
9154 3' -53.6 NC_002512.2 + 126917 0.66 0.983135
Target:  5'- gGGGGGAGgccGGGCuGGCGAUacccgcccgcgccccGGUCGACc- -3'
miRNA:   3'- -UCCCCUU---CCUG-CUGCUA---------------CUAGCUGuu -5'
9154 3' -53.6 NC_002512.2 + 132924 0.66 0.980312
Target:  5'- cGGGcGGAAgacgcGGACGACGGUcgGcgCGACGc -3'
miRNA:   3'- -UCC-CCUU-----CCUGCUGCUA--CuaGCUGUu -5'
9154 3' -53.6 NC_002512.2 + 184126 0.66 0.987552
Target:  5'- cGGGGGcGGGuucgcCGACGAcGAcagCGACGAc -3'
miRNA:   3'- -UCCCCuUCCu----GCUGCUaCUa--GCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 196174 0.67 0.975689
Target:  5'- gAGGGGcgagcccgaGGGGGCGACGGccgGGUCccuGGCGAg -3'
miRNA:   3'- -UCCCC---------UUCCUGCUGCUa--CUAG---CUGUU- -5'
9154 3' -53.6 NC_002512.2 + 200360 0.67 0.973101
Target:  5'- gGGGGGAcGGGGCGgGgGGUGAggGGCGGg -3'
miRNA:   3'- -UCCCCU-UCCUGC-UgCUACUagCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 225997 0.66 0.985973
Target:  5'- aAGGGGAccGGGACGcCGGUGc-UGACu- -3'
miRNA:   3'- -UCCCCU--UCCUGCuGCUACuaGCUGuu -5'
9154 3' -53.6 NC_002512.2 + 129294 0.66 0.984246
Target:  5'- gGGGGGAGGGAgcaCGGCGGaggGAaCGGgAAg -3'
miRNA:   3'- -UCCCCUUCCU---GCUGCUa--CUaGCUgUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.