miRNA display CGI


Results 61 - 80 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9154 3' -53.6 NC_002512.2 + 134287 0.69 0.944943
Target:  5'- gAGGGaGAAGG-CGGCGAcGA-CGACGu -3'
miRNA:   3'- -UCCC-CUUCCuGCUGCUaCUaGCUGUu -5'
9154 3' -53.6 NC_002512.2 + 110274 0.69 0.944943
Target:  5'- gGGGcGGGAGGcgaGCGGCGA-GggCGACAc -3'
miRNA:   3'- -UCC-CCUUCC---UGCUGCUaCuaGCUGUu -5'
9154 3' -53.6 NC_002512.2 + 148438 0.69 0.942258
Target:  5'- cGGGGGAGGACGggggccgggccccccGCGGgacgGAgccgCGACGg -3'
miRNA:   3'- uCCCCUUCCUGC---------------UGCUa---CUa---GCUGUu -5'
9154 3' -53.6 NC_002512.2 + 103033 0.69 0.940421
Target:  5'- -cGGGAagAGGACGACGgcGAcgaccgCGACGAg -3'
miRNA:   3'- ucCCCU--UCCUGCUGCuaCUa-----GCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 121878 0.69 0.940421
Target:  5'- gAGGGGGAGGuCG-CGggGGacgcUCGGCGAc -3'
miRNA:   3'- -UCCCCUUCCuGCuGCuaCU----AGCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 100814 0.69 0.940421
Target:  5'- cGGGGucgaccuGGACGAgGAUGuucAUCGGCGu -3'
miRNA:   3'- uCCCCuu-----CCUGCUgCUAC---UAGCUGUu -5'
9154 3' -53.6 NC_002512.2 + 11736 0.69 0.939956
Target:  5'- cGGGGAcgaggccGGGAgCGACGAcGA-CGACGAc -3'
miRNA:   3'- uCCCCU-------UCCU-GCUGCUaCUaGCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 123142 0.69 0.935667
Target:  5'- cGGGGGAcGGGGCGGCGGcgccgcGAUCGcCGc -3'
miRNA:   3'- -UCCCCU-UCCUGCUGCUa-----CUAGCuGUu -5'
9154 3' -53.6 NC_002512.2 + 174124 0.69 0.935667
Target:  5'- cGGGGAAcGACGACGAcgccGAcucgcUCGACAc -3'
miRNA:   3'- uCCCCUUcCUGCUGCUa---CU-----AGCUGUu -5'
9154 3' -53.6 NC_002512.2 + 90543 0.69 0.935667
Target:  5'- uGGGGGAggaggagcgggAGGACGAgGgcGAgggCGACGg -3'
miRNA:   3'- -UCCCCU-----------UCCUGCUgCuaCUa--GCUGUu -5'
9154 3' -53.6 NC_002512.2 + 96626 0.69 0.930679
Target:  5'- cGGGGGAGGGCGAgGAaaccgCGACc- -3'
miRNA:   3'- uCCCCUUCCUGCUgCUacua-GCUGuu -5'
9154 3' -53.6 NC_002512.2 + 158701 0.69 0.930679
Target:  5'- cGGGGAggugcccgAGGugGACGAcgUGuccuucuucGUCGACGAc -3'
miRNA:   3'- uCCCCU--------UCCugCUGCU--AC---------UAGCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 191302 0.69 0.930679
Target:  5'- cGGGGGAcgGGGGCcggGACGcgGGUCGGgAc -3'
miRNA:   3'- -UCCCCU--UCCUG---CUGCuaCUAGCUgUu -5'
9154 3' -53.6 NC_002512.2 + 39557 0.69 0.930679
Target:  5'- -cGGGAcggugccaAGGGCGGCGAcGggCGACAAg -3'
miRNA:   3'- ucCCCU--------UCCUGCUGCUaCuaGCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 122013 0.69 0.930679
Target:  5'- gAGGGGccGGA-GGCGGcgGAUCGGCGc -3'
miRNA:   3'- -UCCCCuuCCUgCUGCUa-CUAGCUGUu -5'
9154 3' -53.6 NC_002512.2 + 86943 0.69 0.930679
Target:  5'- --cGGAGGaGACGGCGAUGGugacgcugucggUCGACGAa -3'
miRNA:   3'- uccCCUUC-CUGCUGCUACU------------AGCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 204841 0.69 0.925455
Target:  5'- --cGGGAGGACGACGgcGGUCGGu-- -3'
miRNA:   3'- uccCCUUCCUGCUGCuaCUAGCUguu -5'
9154 3' -53.6 NC_002512.2 + 85822 0.69 0.919996
Target:  5'- cAGGGGAcagaaAGGaACGGCGAUGAcgggUCGGUAGg -3'
miRNA:   3'- -UCCCCU-----UCC-UGCUGCUACU----AGCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 56991 0.69 0.919996
Target:  5'- cGGGGGAcagccguGGGCGGCcg-GGUCGGCGGu -3'
miRNA:   3'- -UCCCCUu------CCUGCUGcuaCUAGCUGUU- -5'
9154 3' -53.6 NC_002512.2 + 153745 0.7 0.902216
Target:  5'- uGGGGGGGuggucgaaucGGACGACGuc-AUCGACAc -3'
miRNA:   3'- -UCCCCUU----------CCUGCUGCuacUAGCUGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.