miRNA display CGI


Results 21 - 40 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9154 5' -60.9 NC_002512.2 + 856 0.66 0.791198
Target:  5'- -cCUGCc---UCUGCUcCGCCGUCCGCu -3'
miRNA:   3'- gcGACGacuaGGACGA-GCGGCGGGCG- -5'
9154 5' -60.9 NC_002512.2 + 24337 0.66 0.791198
Target:  5'- gGCUGUUGAUguucaagcCCUGCagcUGCCGCUguaUGCg -3'
miRNA:   3'- gCGACGACUA--------GGACGa--GCGGCGG---GCG- -5'
9154 5' -60.9 NC_002512.2 + 2614 0.66 0.791198
Target:  5'- uGgUGCUGuucuccgccGUCCUgucGCUCGUCcugauGCCCGCc -3'
miRNA:   3'- gCgACGAC---------UAGGA---CGAGCGG-----CGGGCG- -5'
9154 5' -60.9 NC_002512.2 + 171991 0.66 0.791198
Target:  5'- -cCUGCUGAUCgCcGUcgccgUCGCCGCCguCGCc -3'
miRNA:   3'- gcGACGACUAG-GaCG-----AGCGGCGG--GCG- -5'
9154 5' -60.9 NC_002512.2 + 221520 0.66 0.791198
Target:  5'- gCGCcGCgGAUCCUcggcGCUccCGCCuaCCGCu -3'
miRNA:   3'- -GCGaCGaCUAGGA----CGA--GCGGcgGGCG- -5'
9154 5' -60.9 NC_002512.2 + 62930 0.66 0.790338
Target:  5'- aGCUGCUGcuuguccaugaacAUCCgcUGCuucucgUCGCCGCaCGCc -3'
miRNA:   3'- gCGACGAC-------------UAGG--ACG------AGCGGCGgGCG- -5'
9154 5' -60.9 NC_002512.2 + 97280 0.66 0.788614
Target:  5'- aCGCaucggggagGCcGAgcgUCUGCUCGCCgaaccccuggccgcGCCCGCc -3'
miRNA:   3'- -GCGa--------CGaCUa--GGACGAGCGG--------------CGGGCG- -5'
9154 5' -60.9 NC_002512.2 + 112180 0.66 0.788614
Target:  5'- uCGCUGCgcacccgccgcaggUGcgCCacgcaGCUCGUCGaCCCGUa -3'
miRNA:   3'- -GCGACG--------------ACuaGGa----CGAGCGGC-GGGCG- -5'
9154 5' -60.9 NC_002512.2 + 135339 0.66 0.773769
Target:  5'- aGCcGCgccggGGUgCUGCUgGCCGUcgaCCGCu -3'
miRNA:   3'- gCGaCGa----CUAgGACGAgCGGCG---GGCG- -5'
9154 5' -60.9 NC_002512.2 + 196229 0.66 0.773769
Target:  5'- aGCcuCUGAgacCCUGUcCGCCgcGCCCGCg -3'
miRNA:   3'- gCGacGACUa--GGACGaGCGG--CGGGCG- -5'
9154 5' -60.9 NC_002512.2 + 119250 0.66 0.768449
Target:  5'- gGCgGCUGgAUCCcgGCgaccccauggucugCGCCGCCCa- -3'
miRNA:   3'- gCGaCGAC-UAGGa-CGa-------------GCGGCGGGcg -5'
9154 5' -60.9 NC_002512.2 + 72844 0.66 0.764881
Target:  5'- cCGCcuUGCcgGGUCCUcGCUCcggGCCGCgUCGCc -3'
miRNA:   3'- -GCG--ACGa-CUAGGA-CGAG---CGGCG-GGCG- -5'
9154 5' -60.9 NC_002512.2 + 120868 0.66 0.764881
Target:  5'- gCGCcGCgGGUCCgcagGacgaCGCCGCCgGCg -3'
miRNA:   3'- -GCGaCGaCUAGGa---Cga--GCGGCGGgCG- -5'
9154 5' -60.9 NC_002512.2 + 116546 0.66 0.764881
Target:  5'- aGCUGCUGGggaUGaaCgGCCGCCUGUg -3'
miRNA:   3'- gCGACGACUaggACgaG-CGGCGGGCG- -5'
9154 5' -60.9 NC_002512.2 + 126391 0.66 0.764881
Target:  5'- gCGCUGCccggcgagcGGUCCgcgGC-CGCCGCcgagacccgagCCGCg -3'
miRNA:   3'- -GCGACGa--------CUAGGa--CGaGCGGCG-----------GGCG- -5'
9154 5' -60.9 NC_002512.2 + 169977 0.67 0.755889
Target:  5'- uCGggGCgaacGUCCcGCUCGCCGUgCGCc -3'
miRNA:   3'- -GCgaCGac--UAGGaCGAGCGGCGgGCG- -5'
9154 5' -60.9 NC_002512.2 + 217058 0.67 0.755889
Target:  5'- cCGCgUGCUGcauGUCggugaUGUUCaGCCGCCCGa -3'
miRNA:   3'- -GCG-ACGAC---UAGg----ACGAG-CGGCGGGCg -5'
9154 5' -60.9 NC_002512.2 + 220288 0.67 0.755889
Target:  5'- gGCaGCU--UCCUGCcCGCCGagCCGCc -3'
miRNA:   3'- gCGaCGAcuAGGACGaGCGGCg-GGCG- -5'
9154 5' -60.9 NC_002512.2 + 148850 0.67 0.755889
Target:  5'- cCGCUGCcgGAacgCCgGCUgcCGCCuccGCCUGCg -3'
miRNA:   3'- -GCGACGa-CUa--GGaCGA--GCGG---CGGGCG- -5'
9154 5' -60.9 NC_002512.2 + 227648 0.67 0.754079
Target:  5'- aCGgaGCgcccgGGUCCggaggaagagcgGCggCGCCGCCgGCg -3'
miRNA:   3'- -GCgaCGa----CUAGGa-----------CGa-GCGGCGGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.