miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9155 3' -56.3 NC_002512.2 + 98068 0.66 0.957747
Target:  5'- --cCGGcUCGUCUCCCGGgaCGUgUCc -3'
miRNA:   3'- gcaGCU-AGCAGAGGGCCgaGCGaAGa -5'
9155 3' -56.3 NC_002512.2 + 145645 0.66 0.954067
Target:  5'- gCGUCGAgaugcCGgg-CCCGcGCUCGCUcuUCg -3'
miRNA:   3'- -GCAGCUa----GCagaGGGC-CGAGCGA--AGa -5'
9155 3' -56.3 NC_002512.2 + 105880 0.66 0.954067
Target:  5'- gCG-CGGgucCGUCUCCCacccggugGGCUCGCcgUCg -3'
miRNA:   3'- -GCaGCUa--GCAGAGGG--------CCGAGCGa-AGa -5'
9155 3' -56.3 NC_002512.2 + 180548 0.66 0.946072
Target:  5'- uCGUCGAUCGgcgCUUgCGGCggGCUcCg -3'
miRNA:   3'- -GCAGCUAGCa--GAGgGCCGagCGAaGa -5'
9155 3' -56.3 NC_002512.2 + 107586 0.67 0.937213
Target:  5'- uGUUGAucUCGUCgacgUgCGGCUCGCUg-- -3'
miRNA:   3'- gCAGCU--AGCAGa---GgGCCGAGCGAaga -5'
9155 3' -56.3 NC_002512.2 + 69925 0.67 0.937213
Target:  5'- gGUCGAg-GUCUCCCGGUagGUcUCc -3'
miRNA:   3'- gCAGCUagCAGAGGGCCGagCGaAGa -5'
9155 3' -56.3 NC_002512.2 + 103431 0.68 0.916853
Target:  5'- cCGUCGAacgCGUCgUCCCGGUccgagCGCgggUCc -3'
miRNA:   3'- -GCAGCUa--GCAG-AGGGCCGa----GCGa--AGa -5'
9155 3' -56.3 NC_002512.2 + 151922 0.68 0.911213
Target:  5'- uCGUCGGUCccCgagacgaaCCCGGCUCGCgacUCg -3'
miRNA:   3'- -GCAGCUAGcaGa-------GGGCCGAGCGa--AGa -5'
9155 3' -56.3 NC_002512.2 + 218142 0.68 0.886484
Target:  5'- uCGUCGucGUCGUCgcUCCCGGcCUCGUc--- -3'
miRNA:   3'- -GCAGC--UAGCAG--AGGGCC-GAGCGaaga -5'
9155 3' -56.3 NC_002512.2 + 173535 0.68 0.884493
Target:  5'- cCGUCGGggcCGUCUgCCCGgGCUgugccgucuacucgCGCUUCa -3'
miRNA:   3'- -GCAGCUa--GCAGA-GGGC-CGA--------------GCGAAGa -5'
9155 3' -56.3 NC_002512.2 + 128521 0.69 0.872862
Target:  5'- aCGUC-AUCGUCUCCCcGUUCGUggggCUg -3'
miRNA:   3'- -GCAGcUAGCAGAGGGcCGAGCGaa--GA- -5'
9155 3' -56.3 NC_002512.2 + 104825 0.69 0.872862
Target:  5'- gCGUCGAaCGUCccgUCCCGGCUggaGCggCg -3'
miRNA:   3'- -GCAGCUaGCAG---AGGGCCGAg--CGaaGa -5'
9155 3' -56.3 NC_002512.2 + 5080 0.69 0.858442
Target:  5'- gCGUUGGUCGUCgUCgCCGGCgucggCGCgggCg -3'
miRNA:   3'- -GCAGCUAGCAG-AG-GGCCGa----GCGaa-Ga -5'
9155 3' -56.3 NC_002512.2 + 104342 0.7 0.835411
Target:  5'- cCGUCGGUCGggcggCGGCUCGCUUg- -3'
miRNA:   3'- -GCAGCUAGCagaggGCCGAGCGAAga -5'
9155 3' -56.3 NC_002512.2 + 12589 0.7 0.819192
Target:  5'- aGcCGAUCaUCUCCCGGCgCGCggUCc -3'
miRNA:   3'- gCaGCUAGcAGAGGGCCGaGCGa-AGa -5'
9155 3' -56.3 NC_002512.2 + 977 0.71 0.775128
Target:  5'- uCGUCGuccucucucgcGUCGUCUCcucccugCCGuGCUUGCUUCUg -3'
miRNA:   3'- -GCAGC-----------UAGCAGAG-------GGC-CGAGCGAAGA- -5'
9155 3' -56.3 NC_002512.2 + 53908 0.71 0.757871
Target:  5'- -cUCGGUCGcCUCCCuguugaccGGCaUCGCUUCa -3'
miRNA:   3'- gcAGCUAGCaGAGGG--------CCG-AGCGAAGa -5'
9155 3' -56.3 NC_002512.2 + 83144 0.72 0.739306
Target:  5'- uCGUCGAggUCGUCgggCCCGGCggcCGCg--- -3'
miRNA:   3'- -GCAGCU--AGCAGa--GGGCCGa--GCGaaga -5'
9155 3' -56.3 NC_002512.2 + 105075 0.73 0.691526
Target:  5'- uGUCGGgguaGUCUCCCGGCUC-CgUCa -3'
miRNA:   3'- gCAGCUag--CAGAGGGCCGAGcGaAGa -5'
9155 3' -56.3 NC_002512.2 + 76637 1.07 0.006199
Target:  5'- cCGUCGAUCGUCUCCCGGCUCGCUUCUu -3'
miRNA:   3'- -GCAGCUAGCAGAGGGCCGAGCGAAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.