miRNA display CGI


Results 1 - 20 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9155 5' -52.4 NC_002512.2 + 141008 0.66 0.997394
Target:  5'- gCGAAGGAcgGCGACCGacAGAgCCGagaUCGa -3'
miRNA:   3'- -GCUUUCU--UGCUGGCc-UCUaGGCg--AGC- -5'
9155 5' -52.4 NC_002512.2 + 116034 0.66 0.997394
Target:  5'- cCGAGAGuuCGccaaGCCGGAGAacuaUCUGCUg- -3'
miRNA:   3'- -GCUUUCuuGC----UGGCCUCU----AGGCGAgc -5'
9155 5' -52.4 NC_002512.2 + 58279 0.66 0.997394
Target:  5'- cCGAAGGcGACGACCucgauguuguaGGAGAgcCCGC-CGu -3'
miRNA:   3'- -GCUUUC-UUGCUGG-----------CCUCUa-GGCGaGC- -5'
9155 5' -52.4 NC_002512.2 + 170261 0.66 0.997394
Target:  5'- uGGAAGu-CGAagaUGGucacGAUCCGCUCGc -3'
miRNA:   3'- gCUUUCuuGCUg--GCCu---CUAGGCGAGC- -5'
9155 5' -52.4 NC_002512.2 + 185845 0.66 0.997394
Target:  5'- cCGAAAaGugGACCacGGGUCCGUUCu -3'
miRNA:   3'- -GCUUUcUugCUGGccUCUAGGCGAGc -5'
9155 5' -52.4 NC_002512.2 + 145538 0.66 0.997394
Target:  5'- --------gGGCCGGAGcAUCcCGCUCGa -3'
miRNA:   3'- gcuuucuugCUGGCCUC-UAG-GCGAGC- -5'
9155 5' -52.4 NC_002512.2 + 149370 0.66 0.997394
Target:  5'- gGAGAGGACGaggGCgCGGGGAcgcaggacUCCgGCUCc -3'
miRNA:   3'- gCUUUCUUGC---UG-GCCUCU--------AGG-CGAGc -5'
9155 5' -52.4 NC_002512.2 + 226757 0.66 0.997394
Target:  5'- cCGGccGGACGACgCGGAGGgcgaggaCGuCUCGg -3'
miRNA:   3'- -GCUuuCUUGCUG-GCCUCUag-----GC-GAGC- -5'
9155 5' -52.4 NC_002512.2 + 125440 0.66 0.996941
Target:  5'- cCGcGAGAACGACCGGaAGAcaUCGCcccccaUCGa -3'
miRNA:   3'- -GCuUUCUUGCUGGCC-UCUa-GGCG------AGC- -5'
9155 5' -52.4 NC_002512.2 + 104959 0.66 0.996941
Target:  5'- uCGGGAGAuCGacGCCGGG--UCCGcCUCGa -3'
miRNA:   3'- -GCUUUCUuGC--UGGCCUcuAGGC-GAGC- -5'
9155 5' -52.4 NC_002512.2 + 220584 0.66 0.996941
Target:  5'- cCGAuGGAGUG-CCGG-GAUCCGgUCGu -3'
miRNA:   3'- -GCUuUCUUGCuGGCCuCUAGGCgAGC- -5'
9155 5' -52.4 NC_002512.2 + 24205 0.66 0.996941
Target:  5'- uCGAcAGGACGgugacGCCGGAGcuGUCCGaggcgUCGg -3'
miRNA:   3'- -GCUuUCUUGC-----UGGCCUC--UAGGCg----AGC- -5'
9155 5' -52.4 NC_002512.2 + 4644 0.66 0.996941
Target:  5'- aGAAGGAGCacggGAgCGGAGGccCCGC-CGg -3'
miRNA:   3'- gCUUUCUUG----CUgGCCUCUa-GGCGaGC- -5'
9155 5' -52.4 NC_002512.2 + 150195 0.66 0.996941
Target:  5'- gGGGAGAGgGAuccgggaacCCGGAGG-CCGC-CGg -3'
miRNA:   3'- gCUUUCUUgCU---------GGCCUCUaGGCGaGC- -5'
9155 5' -52.4 NC_002512.2 + 8255 0.66 0.996941
Target:  5'- aGAGcAGGGCcGCCGGguGGAcCCGCUCc -3'
miRNA:   3'- gCUU-UCUUGcUGGCC--UCUaGGCGAGc -5'
9155 5' -52.4 NC_002512.2 + 68007 0.66 0.996792
Target:  5'- aGAGGGAGCGAcgagacgcaccgacCCgGGAGGaCCGC-CGa -3'
miRNA:   3'- gCUUUCUUGCU--------------GG-CCUCUaGGCGaGC- -5'
9155 5' -52.4 NC_002512.2 + 14421 0.66 0.996424
Target:  5'- aGGAGGAGuCGacGCCGGcGAUgacCCGCUCc -3'
miRNA:   3'- gCUUUCUU-GC--UGGCCuCUA---GGCGAGc -5'
9155 5' -52.4 NC_002512.2 + 196440 0.66 0.996424
Target:  5'- ------cACGACCGGAGAUCgcaGUUCu -3'
miRNA:   3'- gcuuucuUGCUGGCCUCUAGg--CGAGc -5'
9155 5' -52.4 NC_002512.2 + 95848 0.66 0.996424
Target:  5'- aGGuuGAACauGGCCGGGuGGUCCGC-Ca -3'
miRNA:   3'- gCUuuCUUG--CUGGCCU-CUAGGCGaGc -5'
9155 5' -52.4 NC_002512.2 + 148925 0.66 0.996424
Target:  5'- gCGguGGAugGggACCGGAG-UCCGUuuUCGc -3'
miRNA:   3'- -GCuuUCUugC--UGGCCUCuAGGCG--AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.