miRNA display CGI


Results 1 - 20 of 331 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9156 3' -61.2 NC_002512.2 + 70315 0.66 0.838544
Target:  5'- aUCCGGAcugACCCGucaacAAgGCCGaUCCCGg -3'
miRNA:   3'- cAGGCCU---UGGGCc----UUgCGGCaGGGGC- -5'
9156 3' -61.2 NC_002512.2 + 211550 0.66 0.838544
Target:  5'- uGUUCGGcguguGCCgCGGGAUGUccccaugcggggCGUCCCCa -3'
miRNA:   3'- -CAGGCCu----UGG-GCCUUGCG------------GCAGGGGc -5'
9156 3' -61.2 NC_002512.2 + 217582 0.66 0.838544
Target:  5'- -gCCGG--UCCGGcGGCGCCG-CCUCGg -3'
miRNA:   3'- caGGCCuuGGGCC-UUGCGGCaGGGGC- -5'
9156 3' -61.2 NC_002512.2 + 215343 0.66 0.838544
Target:  5'- -aCCGGAucguGCCCGGcucCGUCGaCUCCGu -3'
miRNA:   3'- caGGCCU----UGGGCCuu-GCGGCaGGGGC- -5'
9156 3' -61.2 NC_002512.2 + 225288 0.66 0.838544
Target:  5'- cGUCCGucucgcGGCCCGcGGCGCCGcCUCCu -3'
miRNA:   3'- -CAGGCc-----UUGGGCcUUGCGGCaGGGGc -5'
9156 3' -61.2 NC_002512.2 + 147442 0.66 0.838544
Target:  5'- cUUCGGGAgCgGGAccgACGCCcccucGUCCCCu -3'
miRNA:   3'- cAGGCCUUgGgCCU---UGCGG-----CAGGGGc -5'
9156 3' -61.2 NC_002512.2 + 6854 0.66 0.838543
Target:  5'- -cCCGGAccuCgCCGGAguggGCGacgacCCGUCCCUGg -3'
miRNA:   3'- caGGCCUu--G-GGCCU----UGC-----GGCAGGGGC- -5'
9156 3' -61.2 NC_002512.2 + 118657 0.66 0.838543
Target:  5'- cUCCGGGcGCCCGGc-CGCCcGUCaucgucuguCCCGa -3'
miRNA:   3'- cAGGCCU-UGGGCCuuGCGG-CAG---------GGGC- -5'
9156 3' -61.2 NC_002512.2 + 68026 0.66 0.838543
Target:  5'- -aCCG--ACCCGGGaggaccgccgACGCCGUgUCCGg -3'
miRNA:   3'- caGGCcuUGGGCCU----------UGCGGCAgGGGC- -5'
9156 3' -61.2 NC_002512.2 + 29550 0.66 0.838543
Target:  5'- cGUCCGccgacaggaGGACgCCGGcgggaaGCCGcUCCCCGa -3'
miRNA:   3'- -CAGGC---------CUUG-GGCCuug---CGGC-AGGGGC- -5'
9156 3' -61.2 NC_002512.2 + 4226 0.66 0.838543
Target:  5'- --gCGGGGagCGGGACGUCGagCCCCGa -3'
miRNA:   3'- cagGCCUUggGCCUUGCGGCa-GGGGC- -5'
9156 3' -61.2 NC_002512.2 + 24789 0.66 0.838543
Target:  5'- gGUCCGGGcgcGCCCcccgaggacGGAucgcCGCCGcUCUCCa -3'
miRNA:   3'- -CAGGCCU---UGGG---------CCUu---GCGGC-AGGGGc -5'
9156 3' -61.2 NC_002512.2 + 63020 0.66 0.837783
Target:  5'- -aCCaGGAGCUCggcgagcagGGAGCGCCGgacgugcUCCCUGa -3'
miRNA:   3'- caGG-CCUUGGG---------CCUUGCGGC-------AGGGGC- -5'
9156 3' -61.2 NC_002512.2 + 116750 0.66 0.830871
Target:  5'- -gCCGGcGCCCc--GCGCgCGUCUCCGa -3'
miRNA:   3'- caGGCCuUGGGccuUGCG-GCAGGGGC- -5'
9156 3' -61.2 NC_002512.2 + 2376 0.66 0.830871
Target:  5'- -gCCGGAcucuccccCCCGGGucGCGgCGUCUCCu -3'
miRNA:   3'- caGGCCUu-------GGGCCU--UGCgGCAGGGGc -5'
9156 3' -61.2 NC_002512.2 + 15102 0.66 0.830871
Target:  5'- -aCCagGGGACCCGGAggGCGaCCGgCgCCGg -3'
miRNA:   3'- caGG--CCUUGGGCCU--UGC-GGCaGgGGC- -5'
9156 3' -61.2 NC_002512.2 + 75152 0.66 0.830871
Target:  5'- -gUCGGAcgcgGCCgCGGAcgcaACGCCGUUCCg- -3'
miRNA:   3'- caGGCCU----UGG-GCCU----UGCGGCAGGGgc -5'
9156 3' -61.2 NC_002512.2 + 128211 0.66 0.830871
Target:  5'- -aCCGGGGaCgGGGACGaCUGUCUCCa -3'
miRNA:   3'- caGGCCUUgGgCCUUGC-GGCAGGGGc -5'
9156 3' -61.2 NC_002512.2 + 131094 0.66 0.830871
Target:  5'- -gCCGGGguACCUGGAcgugguGCGCCGggCCaCCu -3'
miRNA:   3'- caGGCCU--UGGGCCU------UGCGGCa-GG-GGc -5'
9156 3' -61.2 NC_002512.2 + 95242 0.66 0.830871
Target:  5'- cUCCGGAGggggcgUCCGGAGgGCCGcgcggCUCCu -3'
miRNA:   3'- cAGGCCUU------GGGCCUUgCGGCa----GGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.