miRNA display CGI


Results 1 - 20 of 214 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9156 5' -55.1 NC_002512.2 + 121831 0.66 0.9807
Target:  5'- gGGCgGGUGAccugacgauCGCGGuCCgCAACCUgCGGa -3'
miRNA:   3'- -CUG-CCAUU---------GCGUCuGG-GUUGGAgGCC- -5'
9156 5' -55.1 NC_002512.2 + 1716 0.66 0.9807
Target:  5'- gGACGGUGcCGCu--CCCG--CUCCGGc -3'
miRNA:   3'- -CUGCCAUuGCGucuGGGUugGAGGCC- -5'
9156 5' -55.1 NC_002512.2 + 34513 0.66 0.9807
Target:  5'- cGGCaGGUGAC-CAGGCagCCGACCagcacCCGGg -3'
miRNA:   3'- -CUG-CCAUUGcGUCUG--GGUUGGa----GGCC- -5'
9156 5' -55.1 NC_002512.2 + 128134 0.66 0.9807
Target:  5'- cGACGG-AGCGCccGGGCCaCcACCUCgCGa -3'
miRNA:   3'- -CUGCCaUUGCG--UCUGG-GuUGGAG-GCc -5'
9156 5' -55.1 NC_002512.2 + 188772 0.66 0.9807
Target:  5'- gGGCGGUuccGGCgGCGGcUCCGGCCUCggCGGc -3'
miRNA:   3'- -CUGCCA---UUG-CGUCuGGGUUGGAG--GCC- -5'
9156 5' -55.1 NC_002512.2 + 154754 0.66 0.9807
Target:  5'- cGACGGcguCGCGGugCCcgUCUCCc- -3'
miRNA:   3'- -CUGCCauuGCGUCugGGuuGGAGGcc -5'
9156 5' -55.1 NC_002512.2 + 17446 0.66 0.980494
Target:  5'- cGGCGGU--CGCGGccggccggcccgaACUCGACCUCCc- -3'
miRNA:   3'- -CUGCCAuuGCGUC-------------UGGGUUGGAGGcc -5'
9156 5' -55.1 NC_002512.2 + 199232 0.66 0.980494
Target:  5'- -cCGGUAgauccgGCGCAG-CCCGAugucgagUCUCUGGa -3'
miRNA:   3'- cuGCCAU------UGCGUCuGGGUU-------GGAGGCC- -5'
9156 5' -55.1 NC_002512.2 + 194784 0.66 0.978564
Target:  5'- cGACGGU-GCGCcgAGGCaCaucaAACgUCCGGa -3'
miRNA:   3'- -CUGCCAuUGCG--UCUG-Gg---UUGgAGGCC- -5'
9156 5' -55.1 NC_002512.2 + 80917 0.66 0.978564
Target:  5'- gGugGGUcGCGCGGGCgC--CCUCCcGGc -3'
miRNA:   3'- -CugCCAuUGCGUCUGgGuuGGAGG-CC- -5'
9156 5' -55.1 NC_002512.2 + 54342 0.66 0.978564
Target:  5'- uGACGGUGAucgccucgauCGCGGccACCCuccaGGCCuUCUGGa -3'
miRNA:   3'- -CUGCCAUU----------GCGUC--UGGG----UUGG-AGGCC- -5'
9156 5' -55.1 NC_002512.2 + 3455 0.66 0.978564
Target:  5'- uGACGGcGACGaAGGuCCCG-CgUCCGGa -3'
miRNA:   3'- -CUGCCaUUGCgUCU-GGGUuGgAGGCC- -5'
9156 5' -55.1 NC_002512.2 + 54549 0.66 0.978564
Target:  5'- --aGGaGGCGCAGgaGCUgAGCCUCCuGGa -3'
miRNA:   3'- cugCCaUUGCGUC--UGGgUUGGAGG-CC- -5'
9156 5' -55.1 NC_002512.2 + 69829 0.66 0.978564
Target:  5'- uGACGGUGACGUGGucgcagagcaaACCCucguACg-CCGGu -3'
miRNA:   3'- -CUGCCAUUGCGUC-----------UGGGu---UGgaGGCC- -5'
9156 5' -55.1 NC_002512.2 + 101597 0.66 0.978564
Target:  5'- cGCGGUcgUGCGGgcggccgucgGCCCGGCg-CCGGg -3'
miRNA:   3'- cUGCCAuuGCGUC----------UGGGUUGgaGGCC- -5'
9156 5' -55.1 NC_002512.2 + 205103 0.66 0.978564
Target:  5'- cGGgGGgcGCGCccGGACCCGAgcgggucuucgUCUCCGa -3'
miRNA:   3'- -CUgCCauUGCG--UCUGGGUU-----------GGAGGCc -5'
9156 5' -55.1 NC_002512.2 + 80717 0.66 0.978564
Target:  5'- --aGGgcGCGCGGGCCCGcgggcggcaccgGCC-CCGcGg -3'
miRNA:   3'- cugCCauUGCGUCUGGGU------------UGGaGGC-C- -5'
9156 5' -55.1 NC_002512.2 + 52745 0.66 0.97789
Target:  5'- aGACGcUGcagcagaacGCGCGGGCCCugcuggcgcacccgGACCUCCuGGu -3'
miRNA:   3'- -CUGCcAU---------UGCGUCUGGG--------------UUGGAGG-CC- -5'
9156 5' -55.1 NC_002512.2 + 11291 0.66 0.976257
Target:  5'- cGCGG--GCG-AGACCCcggggaGACCUCCGa -3'
miRNA:   3'- cUGCCauUGCgUCUGGG------UUGGAGGCc -5'
9156 5' -55.1 NC_002512.2 + 70733 0.66 0.976257
Target:  5'- gGACGGgaGCGC--GCCCGGCCgCCu- -3'
miRNA:   3'- -CUGCCauUGCGucUGGGUUGGaGGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.