miRNA display CGI


Results 1 - 20 of 252 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9157 3' -58.5 NC_002512.2 + 132280 0.65 0.926135
Target:  5'- uGGCGGCGCacaccgagaacacGGACCCGGCguGGa -3'
miRNA:   3'- cCUGUCGCGgcac---------UCUGGGCUGguCC- -5'
9157 3' -58.5 NC_002512.2 + 224601 0.66 0.922554
Target:  5'- ---gGGCGCgGgacgcGGugCCGACCGGGc -3'
miRNA:   3'- ccugUCGCGgCac---UCugGGCUGGUCC- -5'
9157 3' -58.5 NC_002512.2 + 50701 0.66 0.922554
Target:  5'- uGGAcCGGC-CCGa-GGACCCGgcgaaggucGCCAGGg -3'
miRNA:   3'- -CCU-GUCGcGGCacUCUGGGC---------UGGUCC- -5'
9157 3' -58.5 NC_002512.2 + 130683 0.66 0.922554
Target:  5'- gGGACGGgcugcuCGUgGUGGGGCCCG-CCGc- -3'
miRNA:   3'- -CCUGUC------GCGgCACUCUGGGCuGGUcc -5'
9157 3' -58.5 NC_002512.2 + 166305 0.66 0.922554
Target:  5'- cGGCcGCGUCGcccaACCUGGCCAGGa -3'
miRNA:   3'- cCUGuCGCGGCacucUGGGCUGGUCC- -5'
9157 3' -58.5 NC_002512.2 + 100734 0.66 0.922554
Target:  5'- -cGCAGCgaucGUCGUGGGGCCCGuuguacugcGCgAGGc -3'
miRNA:   3'- ccUGUCG----CGGCACUCUGGGC---------UGgUCC- -5'
9157 3' -58.5 NC_002512.2 + 139494 0.66 0.922554
Target:  5'- cGGcCGGCGCCGgcaAGACCucgagCGugCAGa -3'
miRNA:   3'- -CCuGUCGCGGCac-UCUGG-----GCugGUCc -5'
9157 3' -58.5 NC_002512.2 + 95989 0.66 0.922554
Target:  5'- aGGcCAGCGCCc-GGGACcgCCGGCCGa- -3'
miRNA:   3'- -CCuGUCGCGGcaCUCUG--GGCUGGUcc -5'
9157 3' -58.5 NC_002512.2 + 12850 0.66 0.922554
Target:  5'- cGGcCuGCGCCGUGAcgcugGACaggcugcugaagCCGACgCGGGa -3'
miRNA:   3'- -CCuGuCGCGGCACU-----CUG------------GGCUG-GUCC- -5'
9157 3' -58.5 NC_002512.2 + 227675 0.66 0.922034
Target:  5'- cGGCGGCGCCGccgGcGACCgagacgacgacggCGGCgGGGg -3'
miRNA:   3'- cCUGUCGCGGCa--CuCUGG-------------GCUGgUCC- -5'
9157 3' -58.5 NC_002512.2 + 41774 0.66 0.921512
Target:  5'- cGACAGCGuCUGUGAu-CCCGucgccgauugauCCGGGu -3'
miRNA:   3'- cCUGUCGC-GGCACUcuGGGCu-----------GGUCC- -5'
9157 3' -58.5 NC_002512.2 + 135209 0.66 0.917258
Target:  5'- aGGGCAgcugcGCGCCG-GAgagcGugCCGACCGc- -3'
miRNA:   3'- -CCUGU-----CGCGGCaCU----CugGGCUGGUcc -5'
9157 3' -58.5 NC_002512.2 + 30861 0.66 0.917258
Target:  5'- cGAC-GCGCCGcGGuuCCUGACgCAGGa -3'
miRNA:   3'- cCUGuCGCGGCaCUcuGGGCUG-GUCC- -5'
9157 3' -58.5 NC_002512.2 + 227373 0.66 0.917258
Target:  5'- gGGGCcgccGGCGUCGgggGAGAUCCGuuccCCaAGGc -3'
miRNA:   3'- -CCUG----UCGCGGCa--CUCUGGGCu---GG-UCC- -5'
9157 3' -58.5 NC_002512.2 + 103162 0.66 0.917258
Target:  5'- cGAC-GCGCCGc---GCCCGGCgAGGa -3'
miRNA:   3'- cCUGuCGCGGCacucUGGGCUGgUCC- -5'
9157 3' -58.5 NC_002512.2 + 14050 0.66 0.917258
Target:  5'- aGGCGGCGgCGcGu--UCCGGCCGGGa -3'
miRNA:   3'- cCUGUCGCgGCaCucuGGGCUGGUCC- -5'
9157 3' -58.5 NC_002512.2 + 194753 0.66 0.917258
Target:  5'- cGugGGCGCCaGUcGGGACCUGGuCCGc- -3'
miRNA:   3'- cCugUCGCGG-CA-CUCUGGGCU-GGUcc -5'
9157 3' -58.5 NC_002512.2 + 6319 0.66 0.917258
Target:  5'- aGGugGcCGCCGcccgcgggGGGACCgGGCgCGGGg -3'
miRNA:   3'- -CCugUcGCGGCa-------CUCUGGgCUG-GUCC- -5'
9157 3' -58.5 NC_002512.2 + 37430 0.66 0.917258
Target:  5'- cGACAuGCccuccCCGagaGAGACCCGACCccgcGGGg -3'
miRNA:   3'- cCUGU-CGc----GGCa--CUCUGGGCUGG----UCC- -5'
9157 3' -58.5 NC_002512.2 + 226789 0.66 0.917258
Target:  5'- cGGGCGaCGCCGUG-GuCUCGGCCGc- -3'
miRNA:   3'- -CCUGUcGCGGCACuCuGGGCUGGUcc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.