Results 1 - 20 of 252 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
9157 | 3' | -58.5 | NC_002512.2 | + | 132280 | 0.65 | 0.926135 |
Target: 5'- uGGCGGCGCacaccgagaacacGGACCCGGCguGGa -3' miRNA: 3'- cCUGUCGCGgcac---------UCUGGGCUGguCC- -5' |
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9157 | 3' | -58.5 | NC_002512.2 | + | 224601 | 0.66 | 0.922554 |
Target: 5'- ---gGGCGCgGgacgcGGugCCGACCGGGc -3' miRNA: 3'- ccugUCGCGgCac---UCugGGCUGGUCC- -5' |
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9157 | 3' | -58.5 | NC_002512.2 | + | 50701 | 0.66 | 0.922554 |
Target: 5'- uGGAcCGGC-CCGa-GGACCCGgcgaaggucGCCAGGg -3' miRNA: 3'- -CCU-GUCGcGGCacUCUGGGC---------UGGUCC- -5' |
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9157 | 3' | -58.5 | NC_002512.2 | + | 130683 | 0.66 | 0.922554 |
Target: 5'- gGGACGGgcugcuCGUgGUGGGGCCCG-CCGc- -3' miRNA: 3'- -CCUGUC------GCGgCACUCUGGGCuGGUcc -5' |
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9157 | 3' | -58.5 | NC_002512.2 | + | 166305 | 0.66 | 0.922554 |
Target: 5'- cGGCcGCGUCGcccaACCUGGCCAGGa -3' miRNA: 3'- cCUGuCGCGGCacucUGGGCUGGUCC- -5' |
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9157 | 3' | -58.5 | NC_002512.2 | + | 100734 | 0.66 | 0.922554 |
Target: 5'- -cGCAGCgaucGUCGUGGGGCCCGuuguacugcGCgAGGc -3' miRNA: 3'- ccUGUCG----CGGCACUCUGGGC---------UGgUCC- -5' |
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9157 | 3' | -58.5 | NC_002512.2 | + | 139494 | 0.66 | 0.922554 |
Target: 5'- cGGcCGGCGCCGgcaAGACCucgagCGugCAGa -3' miRNA: 3'- -CCuGUCGCGGCac-UCUGG-----GCugGUCc -5' |
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9157 | 3' | -58.5 | NC_002512.2 | + | 95989 | 0.66 | 0.922554 |
Target: 5'- aGGcCAGCGCCc-GGGACcgCCGGCCGa- -3' miRNA: 3'- -CCuGUCGCGGcaCUCUG--GGCUGGUcc -5' |
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9157 | 3' | -58.5 | NC_002512.2 | + | 12850 | 0.66 | 0.922554 |
Target: 5'- cGGcCuGCGCCGUGAcgcugGACaggcugcugaagCCGACgCGGGa -3' miRNA: 3'- -CCuGuCGCGGCACU-----CUG------------GGCUG-GUCC- -5' |
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9157 | 3' | -58.5 | NC_002512.2 | + | 227675 | 0.66 | 0.922034 |
Target: 5'- cGGCGGCGCCGccgGcGACCgagacgacgacggCGGCgGGGg -3' miRNA: 3'- cCUGUCGCGGCa--CuCUGG-------------GCUGgUCC- -5' |
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9157 | 3' | -58.5 | NC_002512.2 | + | 41774 | 0.66 | 0.921512 |
Target: 5'- cGACAGCGuCUGUGAu-CCCGucgccgauugauCCGGGu -3' miRNA: 3'- cCUGUCGC-GGCACUcuGGGCu-----------GGUCC- -5' |
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9157 | 3' | -58.5 | NC_002512.2 | + | 135209 | 0.66 | 0.917258 |
Target: 5'- aGGGCAgcugcGCGCCG-GAgagcGugCCGACCGc- -3' miRNA: 3'- -CCUGU-----CGCGGCaCU----CugGGCUGGUcc -5' |
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9157 | 3' | -58.5 | NC_002512.2 | + | 30861 | 0.66 | 0.917258 |
Target: 5'- cGAC-GCGCCGcGGuuCCUGACgCAGGa -3' miRNA: 3'- cCUGuCGCGGCaCUcuGGGCUG-GUCC- -5' |
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9157 | 3' | -58.5 | NC_002512.2 | + | 227373 | 0.66 | 0.917258 |
Target: 5'- gGGGCcgccGGCGUCGgggGAGAUCCGuuccCCaAGGc -3' miRNA: 3'- -CCUG----UCGCGGCa--CUCUGGGCu---GG-UCC- -5' |
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9157 | 3' | -58.5 | NC_002512.2 | + | 103162 | 0.66 | 0.917258 |
Target: 5'- cGAC-GCGCCGc---GCCCGGCgAGGa -3' miRNA: 3'- cCUGuCGCGGCacucUGGGCUGgUCC- -5' |
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9157 | 3' | -58.5 | NC_002512.2 | + | 14050 | 0.66 | 0.917258 |
Target: 5'- aGGCGGCGgCGcGu--UCCGGCCGGGa -3' miRNA: 3'- cCUGUCGCgGCaCucuGGGCUGGUCC- -5' |
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9157 | 3' | -58.5 | NC_002512.2 | + | 194753 | 0.66 | 0.917258 |
Target: 5'- cGugGGCGCCaGUcGGGACCUGGuCCGc- -3' miRNA: 3'- cCugUCGCGG-CA-CUCUGGGCU-GGUcc -5' |
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9157 | 3' | -58.5 | NC_002512.2 | + | 6319 | 0.66 | 0.917258 |
Target: 5'- aGGugGcCGCCGcccgcgggGGGACCgGGCgCGGGg -3' miRNA: 3'- -CCugUcGCGGCa-------CUCUGGgCUG-GUCC- -5' |
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9157 | 3' | -58.5 | NC_002512.2 | + | 37430 | 0.66 | 0.917258 |
Target: 5'- cGACAuGCccuccCCGagaGAGACCCGACCccgcGGGg -3' miRNA: 3'- cCUGU-CGc----GGCa--CUCUGGGCUGG----UCC- -5' |
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9157 | 3' | -58.5 | NC_002512.2 | + | 226789 | 0.66 | 0.917258 |
Target: 5'- cGGGCGaCGCCGUG-GuCUCGGCCGc- -3' miRNA: 3'- -CCUGUcGCGGCACuCuGGGCUGGUcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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