miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9157 5' -54.2 NC_002512.2 + 119392 0.66 0.984128
Target:  5'- gGCCCUgcUG-CAGggcc-GCGUGCCGCUg -3'
miRNA:   3'- -UGGGA--GCaGUCaacuuCGCAUGGCGA- -5'
9157 5' -54.2 NC_002512.2 + 124162 0.66 0.982241
Target:  5'- gGCCUUCGUCgAGcgGGAGUGcaccugGCUGCUc -3'
miRNA:   3'- -UGGGAGCAG-UCaaCUUCGCa-----UGGCGA- -5'
9157 5' -54.2 NC_002512.2 + 164457 0.66 0.982241
Target:  5'- cGCCCUCGgcg---GggGCGacgACCGCc -3'
miRNA:   3'- -UGGGAGCagucaaCuuCGCa--UGGCGa -5'
9157 5' -54.2 NC_002512.2 + 216923 0.66 0.980191
Target:  5'- --aCUCGUCgcGGUUGAAGCGgaaCGCc -3'
miRNA:   3'- uggGAGCAG--UCAACUUCGCaugGCGa -5'
9157 5' -54.2 NC_002512.2 + 75233 0.66 0.97797
Target:  5'- cGCCgUCG-CGGUgacGAGCGcgGCCGCg -3'
miRNA:   3'- -UGGgAGCaGUCAac-UUCGCa-UGGCGa -5'
9157 5' -54.2 NC_002512.2 + 214627 0.66 0.97797
Target:  5'- gACCCUCG-CGGg-GAcGCGgGCCGCc -3'
miRNA:   3'- -UGGGAGCaGUCaaCUuCGCaUGGCGa -5'
9157 5' -54.2 NC_002512.2 + 191732 0.66 0.97797
Target:  5'- gACCUccgCGUCGGUcGggGUGU-CCGUg -3'
miRNA:   3'- -UGGGa--GCAGUCAaCuuCGCAuGGCGa -5'
9157 5' -54.2 NC_002512.2 + 65978 0.66 0.97557
Target:  5'- -aCCUCGUCGGUgaUGAAGaucuUGCgGCUg -3'
miRNA:   3'- ugGGAGCAGUCA--ACUUCgc--AUGgCGA- -5'
9157 5' -54.2 NC_002512.2 + 86631 0.66 0.972984
Target:  5'- gUCCUCGUCGGcgcgguguggUGGAucGCGgugGCCGCg -3'
miRNA:   3'- uGGGAGCAGUCa---------ACUU--CGCa--UGGCGa -5'
9157 5' -54.2 NC_002512.2 + 211490 0.66 0.972984
Target:  5'- -aCCUCGUcCAGcaGGAGCuccuGUGCCGCc -3'
miRNA:   3'- ugGGAGCA-GUCaaCUUCG----CAUGGCGa -5'
9157 5' -54.2 NC_002512.2 + 186904 0.66 0.972984
Target:  5'- gGCCCUCGUCGGgaaccAGCGcgucUACCuGCc -3'
miRNA:   3'- -UGGGAGCAGUCaacu-UCGC----AUGG-CGa -5'
9157 5' -54.2 NC_002512.2 + 147619 0.67 0.969917
Target:  5'- gACCCUCGaCGGgggcGAcgacgacGGCGgcgGCCGCUc -3'
miRNA:   3'- -UGGGAGCaGUCaa--CU-------UCGCa--UGGCGA- -5'
9157 5' -54.2 NC_002512.2 + 202116 0.67 0.967229
Target:  5'- gUCCUCGUCAGcUGGuGGCGccggucucgGCCGCc -3'
miRNA:   3'- uGGGAGCAGUCaACU-UCGCa--------UGGCGa -5'
9157 5' -54.2 NC_002512.2 + 81359 0.67 0.960656
Target:  5'- uCCCUCG-CGGccGggGCGggcggcgGCCGCc -3'
miRNA:   3'- uGGGAGCaGUCaaCuuCGCa------UGGCGa -5'
9157 5' -54.2 NC_002512.2 + 96168 0.67 0.960656
Target:  5'- gUCCUCGUCcacgaAGUUG-AGCGUgaacagGCCGUUg -3'
miRNA:   3'- uGGGAGCAG-----UCAACuUCGCA------UGGCGA- -5'
9157 5' -54.2 NC_002512.2 + 215059 0.67 0.95705
Target:  5'- cACCgUCGUCGGc---GGCGUcuACCGCg -3'
miRNA:   3'- -UGGgAGCAGUCaacuUCGCA--UGGCGa -5'
9157 5' -54.2 NC_002512.2 + 126303 0.67 0.95705
Target:  5'- cGCCCUCGUgGccugcGAGGCGUcgucuccccacgACCGCUu -3'
miRNA:   3'- -UGGGAGCAgUcaa--CUUCGCA------------UGGCGA- -5'
9157 5' -54.2 NC_002512.2 + 222475 0.68 0.953225
Target:  5'- gGCCCUCG-CGGUcGucaacguGGCGgugGCCGCc -3'
miRNA:   3'- -UGGGAGCaGUCAaCu------UCGCa--UGGCGa -5'
9157 5' -54.2 NC_002512.2 + 170668 0.68 0.940399
Target:  5'- uUCCUCGUCGGgu-GAGCGUGgaGCa -3'
miRNA:   3'- uGGGAGCAGUCaacUUCGCAUggCGa -5'
9157 5' -54.2 NC_002512.2 + 104485 0.69 0.925499
Target:  5'- cGCCCUCGggccCGGggagguucagGAAGCGUccggugACCGCg -3'
miRNA:   3'- -UGGGAGCa---GUCaa--------CUUCGCA------UGGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.