miRNA display CGI


Results 21 - 40 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9158 3' -54.6 NC_002512.2 + 126397 0.66 0.981955
Target:  5'- -cGCCCGGgG-CCCCGGGCGccgUCGa -3'
miRNA:   3'- cuUGGGCUgCaGGGGCUUGCaagAGC- -5'
9158 3' -54.6 NC_002512.2 + 141665 0.66 0.981955
Target:  5'- aAACUCGACGacgcucucguUCCCCGcguACGgUCUCa -3'
miRNA:   3'- cUUGGGCUGC----------AGGGGCu--UGCaAGAGc -5'
9158 3' -54.6 NC_002512.2 + 214427 0.66 0.981955
Target:  5'- -cGCCCGaggaccGCGUCCCCGucuACGUcggCGa -3'
miRNA:   3'- cuUGGGC------UGCAGGGGCu--UGCAagaGC- -5'
9158 3' -54.6 NC_002512.2 + 200726 0.66 0.981955
Target:  5'- -cGCCCGGCgGUCCgaacgggucguaCCGGGCGUggUCGu -3'
miRNA:   3'- cuUGGGCUG-CAGG------------GGCUUGCAagAGC- -5'
9158 3' -54.6 NC_002512.2 + 83157 0.66 0.981163
Target:  5'- cGGGCCCGGCGgccgcggccgccgCCCCGc-CGUcgUCUCc -3'
miRNA:   3'- -CUUGGGCUGCa------------GGGGCuuGCA--AGAGc -5'
9158 3' -54.6 NC_002512.2 + 209090 0.66 0.979928
Target:  5'- gGAGCCCGACGUccgggucgucaCCCCGugucccGACG-UC-CGg -3'
miRNA:   3'- -CUUGGGCUGCA-----------GGGGC------UUGCaAGaGC- -5'
9158 3' -54.6 NC_002512.2 + 219352 0.66 0.979928
Target:  5'- -uGCCCGGCGUCCgCGAgguccuGCGc-CUCu -3'
miRNA:   3'- cuUGGGCUGCAGGgGCU------UGCaaGAGc -5'
9158 3' -54.6 NC_002512.2 + 165667 0.66 0.979928
Target:  5'- cGAGgCCGAgGUCCUCGAugacauCGUcauccagaUCUCGu -3'
miRNA:   3'- -CUUgGGCUgCAGGGGCUu-----GCA--------AGAGC- -5'
9158 3' -54.6 NC_002512.2 + 222092 0.66 0.979928
Target:  5'- cGGACCC--CGUUCCCGGACuucCUCGa -3'
miRNA:   3'- -CUUGGGcuGCAGGGGCUUGcaaGAGC- -5'
9158 3' -54.6 NC_002512.2 + 176804 0.66 0.979928
Target:  5'- cGggUCCugGGCGUCUCUGAucGCGU-CUCGc -3'
miRNA:   3'- -CuuGGG--CUGCAGGGGCU--UGCAaGAGC- -5'
9158 3' -54.6 NC_002512.2 + 169092 0.66 0.979928
Target:  5'- cGGCCCG-CGUCCUCGuccucgcggGGCGUUCggucCGg -3'
miRNA:   3'- cUUGGGCuGCAGGGGC---------UUGCAAGa---GC- -5'
9158 3' -54.6 NC_002512.2 + 112574 0.66 0.979928
Target:  5'- gGAACCCGcCGUCCguCCGGugGUagugCGg -3'
miRNA:   3'- -CUUGGGCuGCAGG--GGCUugCAaga-GC- -5'
9158 3' -54.6 NC_002512.2 + 63265 0.66 0.979928
Target:  5'- ---gCCGACGUUCCCGGACGc----- -3'
miRNA:   3'- cuugGGCUGCAGGGGCUUGCaagagc -5'
9158 3' -54.6 NC_002512.2 + 12781 0.66 0.979928
Target:  5'- aGGACUCGGCGgcgcCCCCGcugccccuGCGgaugCUCGg -3'
miRNA:   3'- -CUUGGGCUGCa---GGGGCu-------UGCaa--GAGC- -5'
9158 3' -54.6 NC_002512.2 + 3574 0.66 0.979928
Target:  5'- cGAGCCaCGGCccacaggCCCCGGGgG-UCUCGg -3'
miRNA:   3'- -CUUGG-GCUGca-----GGGGCUUgCaAGAGC- -5'
9158 3' -54.6 NC_002512.2 + 151824 0.67 0.977735
Target:  5'- -cGCCCGACGUUCCuCGGaugaaugcccGCGUg-UCGg -3'
miRNA:   3'- cuUGGGCUGCAGGG-GCU----------UGCAagAGC- -5'
9158 3' -54.6 NC_002512.2 + 33392 0.67 0.977735
Target:  5'- cGAACCCGGCGUCCgCCagccaGGCGUa---- -3'
miRNA:   3'- -CUUGGGCUGCAGG-GGc----UUGCAagagc -5'
9158 3' -54.6 NC_002512.2 + 126530 0.67 0.977735
Target:  5'- cGACCCGACcgcggCCCCGGAC--UCgUCGa -3'
miRNA:   3'- cUUGGGCUGca---GGGGCUUGcaAG-AGC- -5'
9158 3' -54.6 NC_002512.2 + 139288 0.67 0.977735
Target:  5'- --uCCCGGuccacCGUCCCCuGACaGUUCUCu -3'
miRNA:   3'- cuuGGGCU-----GCAGGGGcUUG-CAAGAGc -5'
9158 3' -54.6 NC_002512.2 + 66027 0.67 0.975371
Target:  5'- --uCCgGugGUUCCCGAGCaggaUCUCGu -3'
miRNA:   3'- cuuGGgCugCAGGGGCUUGca--AGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.