miRNA display CGI


Results 21 - 40 of 50 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9158 5' -48.9 NC_002512.2 + 106784 0.67 0.99935
Target:  5'- gCGCGGGACgGUUCcgCcggacccGCUCGAAGa -3'
miRNA:   3'- -GUGCCUUGgCAAGuaGc------UGAGCUUUa -5'
9158 5' -48.9 NC_002512.2 + 30316 0.67 0.999202
Target:  5'- cCGCGGuACCGcacgagucugUUCAUCGACgcgCGAc-- -3'
miRNA:   3'- -GUGCCuUGGC----------AAGUAGCUGa--GCUuua -5'
9158 5' -48.9 NC_002512.2 + 191187 0.68 0.999025
Target:  5'- uCugGGcGACCGUcuccucCGUCGGCUCGGu-- -3'
miRNA:   3'- -GugCC-UUGGCAa-----GUAGCUGAGCUuua -5'
9158 5' -48.9 NC_002512.2 + 183923 0.68 0.998817
Target:  5'- -uCGGGACCcUUCAgCGGCUCGGc-- -3'
miRNA:   3'- guGCCUUGGcAAGUaGCUGAGCUuua -5'
9158 5' -48.9 NC_002512.2 + 128685 0.68 0.998571
Target:  5'- gACGGGGCCGUcgUgAUCGGCaaGggGUc -3'
miRNA:   3'- gUGCCUUGGCA--AgUAGCUGagCuuUA- -5'
9158 5' -48.9 NC_002512.2 + 139202 0.68 0.998544
Target:  5'- cCACGGGcACCGUcUUAUCGACggaacacUCGAAc- -3'
miRNA:   3'- -GUGCCU-UGGCA-AGUAGCUG-------AGCUUua -5'
9158 5' -48.9 NC_002512.2 + 132087 0.68 0.998544
Target:  5'- gACGGAGCCGgagCGcUCGgaccgggGCUCGAGGg -3'
miRNA:   3'- gUGCCUUGGCaa-GU-AGC-------UGAGCUUUa -5'
9158 5' -48.9 NC_002512.2 + 46011 0.69 0.997561
Target:  5'- aACGGAACgG-UCGUCGugUCGcuGAAUc -3'
miRNA:   3'- gUGCCUUGgCaAGUAGCugAGC--UUUA- -5'
9158 5' -48.9 NC_002512.2 + 190486 0.69 0.997561
Target:  5'- --aGGAGCCGUUCAagUCccuGCUCGAGu- -3'
miRNA:   3'- gugCCUUGGCAAGU--AGc--UGAGCUUua -5'
9158 5' -48.9 NC_002512.2 + 141469 0.69 0.997561
Target:  5'- uCGCGGAGCCG-UCG-CGAC-CGAc-- -3'
miRNA:   3'- -GUGCCUUGGCaAGUaGCUGaGCUuua -5'
9158 5' -48.9 NC_002512.2 + 183660 0.69 0.996601
Target:  5'- gACGGAGaucuacCCGUUCGUCGuCcCGAAAg -3'
miRNA:   3'- gUGCCUU------GGCAAGUAGCuGaGCUUUa -5'
9158 5' -48.9 NC_002512.2 + 88109 0.69 0.996015
Target:  5'- cCGCGGGGCUGaUCAcggucagggUCGACUCGucGUa -3'
miRNA:   3'- -GUGCCUUGGCaAGU---------AGCUGAGCuuUA- -5'
9158 5' -48.9 NC_002512.2 + 16829 0.69 0.996015
Target:  5'- cCGCGGGGCUGggCAgggCGAuCUCGAu-- -3'
miRNA:   3'- -GUGCCUUGGCaaGUa--GCU-GAGCUuua -5'
9158 5' -48.9 NC_002512.2 + 209436 0.69 0.995349
Target:  5'- gCGCGGAugACCG-UCAUCGGC-CGGc-- -3'
miRNA:   3'- -GUGCCU--UGGCaAGUAGCUGaGCUuua -5'
9158 5' -48.9 NC_002512.2 + 75163 0.7 0.994595
Target:  5'- cCGCGGAcgcaacGCCGUUCcGUCGcgccGCUCGAc-- -3'
miRNA:   3'- -GUGCCU------UGGCAAG-UAGC----UGAGCUuua -5'
9158 5' -48.9 NC_002512.2 + 14545 0.7 0.994595
Target:  5'- gACGGAGCCGggCA-CGAUccggUCGAGGa -3'
miRNA:   3'- gUGCCUUGGCaaGUaGCUG----AGCUUUa -5'
9158 5' -48.9 NC_002512.2 + 32576 0.7 0.994595
Target:  5'- cCGCGGGuGCCGgg-GUCGugUCGGAAa -3'
miRNA:   3'- -GUGCCU-UGGCaagUAGCugAGCUUUa -5'
9158 5' -48.9 NC_002512.2 + 118216 0.7 0.994595
Target:  5'- gGCGGAcgaGaUCAUCGGCUCGAAc- -3'
miRNA:   3'- gUGCCUuggCaAGUAGCUGAGCUUua -5'
9158 5' -48.9 NC_002512.2 + 187840 0.7 0.994595
Target:  5'- -cCGGAGCCaGUUCGUCGGCaaGAu-- -3'
miRNA:   3'- guGCCUUGG-CAAGUAGCUGagCUuua -5'
9158 5' -48.9 NC_002512.2 + 7753 0.7 0.993745
Target:  5'- gGCGGAGCCGgggcgguaGUCGGCcgCGGAGa -3'
miRNA:   3'- gUGCCUUGGCaag-----UAGCUGa-GCUUUa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.