miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9159 3' -52.2 NC_002512.2 + 204024 0.66 0.997522
Target:  5'- uCGUGCGGGccgacggcgaacucUcGCCCUacuucggucucagCGACGUgGACGu -3'
miRNA:   3'- -GCACGCCU--------------AaUGGGA-------------GCUGCAaCUGC- -5'
9159 3' -52.2 NC_002512.2 + 42877 0.66 0.997267
Target:  5'- --aGCGGA-UGCCCgaCGGCGUgGugGu -3'
miRNA:   3'- gcaCGCCUaAUGGGa-GCUGCAaCugC- -5'
9159 3' -52.2 NC_002512.2 + 155736 0.66 0.997267
Target:  5'- --aGCGGA---CCCUCGGCuacgUGGCGu -3'
miRNA:   3'- gcaCGCCUaauGGGAGCUGca--ACUGC- -5'
9159 3' -52.2 NC_002512.2 + 19899 0.66 0.997267
Target:  5'- gGUcGCGGAggaACCC-CGGgaagcCGUUGGCGa -3'
miRNA:   3'- gCA-CGCCUaa-UGGGaGCU-----GCAACUGC- -5'
9159 3' -52.2 NC_002512.2 + 53343 0.66 0.996795
Target:  5'- aCGgcgGCGGAgaccACCCUCcccuACG-UGACGg -3'
miRNA:   3'- -GCa--CGCCUaa--UGGGAGc---UGCaACUGC- -5'
9159 3' -52.2 NC_002512.2 + 97077 0.66 0.996258
Target:  5'- gGUGCGGAUcuucuUCCggaaggaCGGCGggGGCGa -3'
miRNA:   3'- gCACGCCUAau---GGGa------GCUGCaaCUGC- -5'
9159 3' -52.2 NC_002512.2 + 147706 0.66 0.996258
Target:  5'- aCG-GCGGAcggGCUCUCGACccuccUGACGc -3'
miRNA:   3'- -GCaCGCCUaa-UGGGAGCUGca---ACUGC- -5'
9159 3' -52.2 NC_002512.2 + 128816 0.66 0.996258
Target:  5'- --cGCGGGcggGCCCUCGACGccGGg- -3'
miRNA:   3'- gcaCGCCUaa-UGGGAGCUGCaaCUgc -5'
9159 3' -52.2 NC_002512.2 + 65481 0.66 0.996142
Target:  5'- gCGUGCGGGaagaaguaCUCGACGggacgcaUGACGg -3'
miRNA:   3'- -GCACGCCUaaugg---GAGCUGCa------ACUGC- -5'
9159 3' -52.2 NC_002512.2 + 112896 0.66 0.996083
Target:  5'- gCGUGCGGccgucgGCCCgcccggacggggcgUCGGCGgcccggUGGCGc -3'
miRNA:   3'- -GCACGCCuaa---UGGG--------------AGCUGCa-----ACUGC- -5'
9159 3' -52.2 NC_002512.2 + 152415 0.66 0.995649
Target:  5'- gCGUGCGcGGgauCCCcggCGACGcgcgUGGCGa -3'
miRNA:   3'- -GCACGC-CUaauGGGa--GCUGCa---ACUGC- -5'
9159 3' -52.2 NC_002512.2 + 117092 0.66 0.995649
Target:  5'- gGUGCGGGccGCCCUgGACcc-GGCa -3'
miRNA:   3'- gCACGCCUaaUGGGAgCUGcaaCUGc -5'
9159 3' -52.2 NC_002512.2 + 166515 0.67 0.993321
Target:  5'- gGUcCGGAUcgGCCCcCGACGgugagGACGa -3'
miRNA:   3'- gCAcGCCUAa-UGGGaGCUGCaa---CUGC- -5'
9159 3' -52.2 NC_002512.2 + 164449 0.67 0.993321
Target:  5'- cCGcuCGGc--GCCCUCGGCGggGGCGa -3'
miRNA:   3'- -GCacGCCuaaUGGGAGCUGCaaCUGC- -5'
9159 3' -52.2 NC_002512.2 + 21606 0.67 0.992355
Target:  5'- --aGCGc----CCCUCGGCGUUGACc -3'
miRNA:   3'- gcaCGCcuaauGGGAGCUGCAACUGc -5'
9159 3' -52.2 NC_002512.2 + 92527 0.67 0.99128
Target:  5'- cCGcGCGGAUcUACCCggccgCGGCGgccgcGGCGa -3'
miRNA:   3'- -GCaCGCCUA-AUGGGa----GCUGCaa---CUGC- -5'
9159 3' -52.2 NC_002512.2 + 193576 0.68 0.987329
Target:  5'- gGUGgGGAUcucAUCCUCcGCGggGACGa -3'
miRNA:   3'- gCACgCCUAa--UGGGAGcUGCaaCUGC- -5'
9159 3' -52.2 NC_002512.2 + 119102 0.68 0.987329
Target:  5'- gGUGCGGGcgG-CCUCGGCGcagcugcgGACGg -3'
miRNA:   3'- gCACGCCUaaUgGGAGCUGCaa------CUGC- -5'
9159 3' -52.2 NC_002512.2 + 133575 0.68 0.985743
Target:  5'- uCGUGCGGcgaccgGCCCgcccgCGGCGgcGGCc -3'
miRNA:   3'- -GCACGCCuaa---UGGGa----GCUGCaaCUGc -5'
9159 3' -52.2 NC_002512.2 + 147604 0.68 0.98401
Target:  5'- cCGUcGCcucGAcccgACCCUCGACGggGGCGa -3'
miRNA:   3'- -GCA-CGc--CUaa--UGGGAGCUGCaaCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.