miRNA display CGI


Results 1 - 20 of 488 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9159 5' -59.8 NC_002512.2 + 73957 0.66 0.885882
Target:  5'- -uCGCCGcUGcucccgaaGCuGGAGGACGcguCGGCGCc -3'
miRNA:   3'- cuGCGGC-AC--------CG-CCUCCUGCu--GCUGCG- -5'
9159 5' -59.8 NC_002512.2 + 103027 0.66 0.885882
Target:  5'- ---cCCGgacgGGaaGAGGACGACGGCGa -3'
miRNA:   3'- cugcGGCa---CCgcCUCCUGCUGCUGCg -5'
9159 5' -59.8 NC_002512.2 + 54148 0.66 0.885882
Target:  5'- gGACGCguuCGgagaGCGGAGGAucaUGACcgGACGCg -3'
miRNA:   3'- -CUGCG---GCac--CGCCUCCU---GCUG--CUGCG- -5'
9159 5' -59.8 NC_002512.2 + 200829 0.66 0.885882
Target:  5'- gGACGCgaaGgucaGCGG-GGGCG-CGGCGCg -3'
miRNA:   3'- -CUGCGg--Cac--CGCCuCCUGCuGCUGCG- -5'
9159 5' -59.8 NC_002512.2 + 24844 0.66 0.885882
Target:  5'- gGGC-CCGcGGcCGGucGGCGGCGgACGCg -3'
miRNA:   3'- -CUGcGGCaCC-GCCucCUGCUGC-UGCG- -5'
9159 5' -59.8 NC_002512.2 + 46359 0.66 0.885882
Target:  5'- uGACGCCGguccgcagccaGGC-GAGGACGGCcucccccuCGCg -3'
miRNA:   3'- -CUGCGGCa----------CCGcCUCCUGCUGcu------GCG- -5'
9159 5' -59.8 NC_002512.2 + 111164 0.66 0.885882
Target:  5'- cGCGCUgccgaucaggugGUGGCGGcugGGGAUGggcACGAuCGCg -3'
miRNA:   3'- cUGCGG------------CACCGCC---UCCUGC---UGCU-GCG- -5'
9159 5' -59.8 NC_002512.2 + 213664 0.66 0.885882
Target:  5'- nGAUGaCGgaGGCGGAGGGgagccCGGCGuCGCc -3'
miRNA:   3'- -CUGCgGCa-CCGCCUCCU-----GCUGCuGCG- -5'
9159 5' -59.8 NC_002512.2 + 22969 0.66 0.885882
Target:  5'- --aGCCGUucaucacccGCGGcGGGACGcggGCGGCGCu -3'
miRNA:   3'- cugCGGCAc--------CGCC-UCCUGC---UGCUGCG- -5'
9159 5' -59.8 NC_002512.2 + 108435 0.66 0.885882
Target:  5'- cGGgGCCGggGGcCGGGGGGucccuccccgGGCGGCGCc -3'
miRNA:   3'- -CUgCGGCa-CC-GCCUCCUg---------CUGCUGCG- -5'
9159 5' -59.8 NC_002512.2 + 35493 0.66 0.885237
Target:  5'- -gUGCCGUGGCGGAGcgugccaGACauCGACa- -3'
miRNA:   3'- cuGCGGCACCGCCUC-------CUGcuGCUGcg -5'
9159 5' -59.8 NC_002512.2 + 91678 0.66 0.87934
Target:  5'- gGACGuCCGUcGGCcccgacGGuAGGAUGuccGCGAUGCa -3'
miRNA:   3'- -CUGC-GGCA-CCG------CC-UCCUGC---UGCUGCG- -5'
9159 5' -59.8 NC_002512.2 + 6072 0.66 0.87934
Target:  5'- cGCGCCGUcgucgucccGGCGGucGcCGcCGACGUc -3'
miRNA:   3'- cUGCGGCA---------CCGCCucCuGCuGCUGCG- -5'
9159 5' -59.8 NC_002512.2 + 125156 0.66 0.87934
Target:  5'- gGGCcCCGggGGCGGGcGGACGGUGACa- -3'
miRNA:   3'- -CUGcGGCa-CCGCCU-CCUGCUGCUGcg -5'
9159 5' -59.8 NC_002512.2 + 109006 0.66 0.87934
Target:  5'- cGGCGCCGgcGGCGucguccugcGGACccGCGGCGCg -3'
miRNA:   3'- -CUGCGGCa-CCGCcu-------CCUGc-UGCUGCG- -5'
9159 5' -59.8 NC_002512.2 + 90172 0.66 0.87934
Target:  5'- -uCGUCGUGGCGGgguuucgcgagAGGAgcgguaaccaGACGACGg -3'
miRNA:   3'- cuGCGGCACCGCC-----------UCCUg---------CUGCUGCg -5'
9159 5' -59.8 NC_002512.2 + 30282 0.66 0.87934
Target:  5'- cGGCGCCaUGGaGGAGGcccccgcgucCGACGAccCGCg -3'
miRNA:   3'- -CUGCGGcACCgCCUCCu---------GCUGCU--GCG- -5'
9159 5' -59.8 NC_002512.2 + 74674 0.66 0.87934
Target:  5'- gGACGggaCGgagGGacgGGAGGACGG-GGCGCg -3'
miRNA:   3'- -CUGCg--GCa--CCg--CCUCCUGCUgCUGCG- -5'
9159 5' -59.8 NC_002512.2 + 116898 0.66 0.87934
Target:  5'- cGGgGCCGgGGCGGGcuccucGGACGGCGucccCGg -3'
miRNA:   3'- -CUgCGGCaCCGCCU------CCUGCUGCu---GCg -5'
9159 5' -59.8 NC_002512.2 + 45406 0.66 0.87934
Target:  5'- -uCGCuCGU-GCGGGcgcucGACGGCGGCGCc -3'
miRNA:   3'- cuGCG-GCAcCGCCUc----CUGCUGCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.