miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9160 3' -50.3 NC_002512.2 + 163305 0.66 0.999179
Target:  5'- -gUgGCGAUAGUCACGUaGUCuUCCUu -3'
miRNA:   3'- caGgCGUUGUCAGUGUAgUAGuAGGA- -5'
9160 3' -50.3 NC_002512.2 + 189856 0.66 0.999179
Target:  5'- cGUCCGCAACcucGUCGCG-CGUCGg--- -3'
miRNA:   3'- -CAGGCGUUGu--CAGUGUaGUAGUagga -5'
9160 3' -50.3 NC_002512.2 + 169033 0.66 0.999179
Target:  5'- cGUCCGCgAGCGG-CGCcggCAUC-UCCUc -3'
miRNA:   3'- -CAGGCG-UUGUCaGUGua-GUAGuAGGA- -5'
9160 3' -50.3 NC_002512.2 + 86598 0.66 0.999162
Target:  5'- -gCCGCGauggucggggggaGCGGUCGguUCcUCGUCCUc -3'
miRNA:   3'- caGGCGU-------------UGUCAGUguAGuAGUAGGA- -5'
9160 3' -50.3 NC_002512.2 + 99665 0.66 0.999162
Target:  5'- aUCCcCGGCAgcucgggcgucgcGUCGCuGUCGUCGUCCUc -3'
miRNA:   3'- cAGGcGUUGU-------------CAGUG-UAGUAGUAGGA- -5'
9160 3' -50.3 NC_002512.2 + 44900 0.66 0.998998
Target:  5'- -gCCGCAGCGcUCACGUCGaCggCCg -3'
miRNA:   3'- caGGCGUUGUcAGUGUAGUaGuaGGa -5'
9160 3' -50.3 NC_002512.2 + 3257 0.66 0.998998
Target:  5'- gGUCCGCGggcuCGGUCccgucgcuGCGUCGcCGUCCc -3'
miRNA:   3'- -CAGGCGUu---GUCAG--------UGUAGUaGUAGGa -5'
9160 3' -50.3 NC_002512.2 + 175098 0.66 0.998998
Target:  5'- gGUCCGCGu--GcCACAUCGUCggucgcguGUCCa -3'
miRNA:   3'- -CAGGCGUuguCaGUGUAGUAG--------UAGGa -5'
9160 3' -50.3 NC_002512.2 + 96110 0.66 0.998998
Target:  5'- -gCCGCcGCcGUCGuCGUCGUCGUCg- -3'
miRNA:   3'- caGGCGuUGuCAGU-GUAGUAGUAGga -5'
9160 3' -50.3 NC_002512.2 + 207950 0.66 0.998998
Target:  5'- gGUCCGUccucuCGG-CACGUCGUCGcCCUc -3'
miRNA:   3'- -CAGGCGuu---GUCaGUGUAGUAGUaGGA- -5'
9160 3' -50.3 NC_002512.2 + 5008 0.66 0.998784
Target:  5'- aUCCGCAACGauGUCACAuaaaaauauaucUCAcauUCGUCUc -3'
miRNA:   3'- cAGGCGUUGU--CAGUGU------------AGU---AGUAGGa -5'
9160 3' -50.3 NC_002512.2 + 118613 0.66 0.998784
Target:  5'- -gCCGCGGgAcGUCgACAUCAagcUCGUCCg -3'
miRNA:   3'- caGGCGUUgU-CAG-UGUAGU---AGUAGGa -5'
9160 3' -50.3 NC_002512.2 + 192906 0.66 0.998784
Target:  5'- cUCCGCGGCGGUC-CAgagCcgCcUCCg -3'
miRNA:   3'- cAGGCGUUGUCAGuGUa--GuaGuAGGa -5'
9160 3' -50.3 NC_002512.2 + 16229 0.66 0.998533
Target:  5'- cUCCGCcuCcGUCAuCGUCGUCGUCg- -3'
miRNA:   3'- cAGGCGuuGuCAGU-GUAGUAGUAGga -5'
9160 3' -50.3 NC_002512.2 + 165714 0.66 0.998533
Target:  5'- gGUCCGU-AUAGUCGCuGUUcgUAUCCg -3'
miRNA:   3'- -CAGGCGuUGUCAGUG-UAGuaGUAGGa -5'
9160 3' -50.3 NC_002512.2 + 100708 0.66 0.998505
Target:  5'- cUCCGCAGC-GUCcccgugaACGUCAgguaGUCCUg -3'
miRNA:   3'- cAGGCGUUGuCAG-------UGUAGUag--UAGGA- -5'
9160 3' -50.3 NC_002512.2 + 192280 0.66 0.998238
Target:  5'- -cUCGgGACGcUCuGCGUCGUCAUCCUg -3'
miRNA:   3'- caGGCgUUGUcAG-UGUAGUAGUAGGA- -5'
9160 3' -50.3 NC_002512.2 + 204112 0.66 0.998238
Target:  5'- -cCCGCG--GGUCgACGUCuUCAUCCa -3'
miRNA:   3'- caGGCGUugUCAG-UGUAGuAGUAGGa -5'
9160 3' -50.3 NC_002512.2 + 179488 0.66 0.998238
Target:  5'- uUCgGCGGCGucGUCGcCAUCGUCGUCg- -3'
miRNA:   3'- cAGgCGUUGU--CAGU-GUAGUAGUAGga -5'
9160 3' -50.3 NC_002512.2 + 187472 0.66 0.998238
Target:  5'- aGUCCGCucugUAGUUu--UCGUCGUCCg -3'
miRNA:   3'- -CAGGCGuu--GUCAGuguAGUAGUAGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.